Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP07_FL5_L01
(867 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0582 - 4318837-4318967,4319219-4319399,4319504-4319701,431... 291 5e-79
07_03_1272 - 25360180-25360286,25360454-25360658,25360748-253609... 281 4e-76
02_01_0004 + 33108-33752 31 1.2
03_02_0907 - 12297523-12297891,12298051-12298200,12298356-122984... 30 2.8
11_06_0458 + 23808402-23808469,23808800-23809684,23810011-238119... 29 6.4
09_06_0103 + 20873310-20873382,20873530-20873735 29 6.4
02_05_0246 + 27136590-27138610,27138933-27139056,27139401-271396... 29 6.4
08_01_0152 - 1190358-1190462,1190648-1190765,1191134-1192691,119... 28 8.4
01_06_0902 + 32853708-32853739,32854787-32855596,32856094-328561... 28 8.4
01_01_0409 - 3084821-3084988,3085069-3085155,3085270-3085476,308... 28 8.4
>03_01_0582 -
4318837-4318967,4319219-4319399,4319504-4319701,
4319791-4320053,4320453-4320597
Length = 305
Score = 291 bits (714), Expect = 5e-79
Identities = 138/255 (54%), Positives = 178/255 (69%)
Frame = +1
Query: 52 ISATMSGGLDVLALNEEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWE 231
++A G L+ E+DV MLAA HLG +N +FQME YVYKRR+DG ++INL +TWE
Sbjct: 1 MAAVAGGAARALSQAEQDVQMMLAADVHLGTKNCDFQMERYVYKRRSDGIYIINLGKTWE 60
Query: 232 KLVLAARAVVAIENPADVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAF 411
KL LAAR +VAIENP D+ V S+RP+GQRAVLKFA +TGA IAGR TPG FTNQ+Q +F
Sbjct: 61 KLQLAARVIVAIENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSF 120
Query: 412 REPRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWW 591
EPRLLI+ DP DHQPI E++ NIP IA C+TDSP+R+VDI IP N K +SIG ++W
Sbjct: 121 SEPRLLILTDPRTDHQPIKESALGNIPTIAFCDTDSPMRYVDIGIPANNKGRNSIGCLFW 180
Query: 592 LLAREVLRLRGVLPRDQRWDVVVDLSFYRXPEXSEKDEQQAKEQAVVPANQKXCSCPRNW 771
LLAR VL++RG + +WDV+VDL FYR PE +++ E++A Q + P W
Sbjct: 181 LLARMVLQMRGTILPGHKWDVMVDLFFYRDPEEAKEQEEEAPAQDFAAITD--YTAPEQW 238
Query: 772 NETWNQWLXGLKIPP 816
+ +QW + PP
Sbjct: 239 SA--DQWTSDVAAPP 251
>07_03_1272 -
25360180-25360286,25360454-25360658,25360748-25360945,
25361034-25361296,25361865-25362009
Length = 305
Score = 281 bits (690), Expect = 4e-76
Identities = 132/216 (61%), Positives = 163/216 (75%)
Frame = +1
Query: 85 LALNEEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWEKLVLAARAVVA 264
L+ E+D+ MLAA HLG +N +FQME YVYKRR DG ++INL +TWEKL LAAR +VA
Sbjct: 12 LSQREQDIQMMLAADVHLGTKNCDFQMERYVYKRRTDGIYIINLGKTWEKLQLAARVIVA 71
Query: 265 IENPADVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLDP 444
IENP D+ V S+RP+GQRAVLKFA +TGA IAGR TPG FTNQ+Q +F EPRLLI+ DP
Sbjct: 72 IENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSFSEPRLLILTDP 131
Query: 445 AQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVLRLRG 624
DHQPI E++ NIP IA C+TDSP+R+VDI IP N K SIG ++WLLAR VL++RG
Sbjct: 132 RTDHQPIKESALGNIPTIAFCDTDSPMRYVDIGIPANNKGKQSIGCLFWLLARMVLQMRG 191
Query: 625 VLPRDQRWDVVVDLSFYRXPEXSEKDEQQAKEQAVV 732
+ +WDV+VDL FYR PE E EQ+ +E A+V
Sbjct: 192 TILPGHKWDVMVDLFFYRDPE--EAKEQEEEEAALV 225
>02_01_0004 + 33108-33752
Length = 214
Score = 31.1 bits (67), Expect = 1.2
Identities = 21/66 (31%), Positives = 26/66 (39%), Gaps = 1/66 (1%)
Frame = -1
Query: 819 AGRYFQPXKPLVPCFIPVSWTG-AXLLVSWYHSXXXXXXXXXXXXFRXTVEGQINHNIPA 643
AG PL+P F+P G A L S R VEGQ+ + A
Sbjct: 107 AGLPLTAPSPLIPPFLPQQGQGDAMLSASLTSPPAAAAVAGGRALLRLRVEGQLRWKVAA 166
Query: 642 LVTGKH 625
VTG+H
Sbjct: 167 WVTGRH 172
>03_02_0907 -
12297523-12297891,12298051-12298200,12298356-12298463,
12298693-12298815,12299039-12299312,12304895-12304973,
12305222-12305256,12305372-12305429,12306185-12307274
Length = 761
Score = 29.9 bits (64), Expect = 2.8
Identities = 19/67 (28%), Positives = 33/67 (49%)
Frame = +1
Query: 622 GVLPRDQRWDVVVDLSFYRXPEXSEKDEQQAKEQAVVPANQKXCSCPRNWNETWNQWLXG 801
G++P +R + + +K EQQ ++QA+ SC ++ +TW+ W G
Sbjct: 386 GIIPVTRRTAKSLKRVWDSVTRQQQKQEQQLQKQAIP-------SCSSSFADTWDPW--G 436
Query: 802 LKIPPRL 822
L PP+L
Sbjct: 437 LLSPPQL 443
>11_06_0458 + 23808402-23808469,23808800-23809684,23810011-23811961,
23812210-23812285,23813064-23813072,23813243-23813335,
23813578-23813581,23813780-23814703,23814926-23815909,
23816073-23816118,23816376-23816951,23817253-23817798,
23817820-23818416
Length = 2252
Score = 28.7 bits (61), Expect = 6.4
Identities = 14/27 (51%), Positives = 17/27 (62%)
Frame = -2
Query: 152 TFSAPRWVVAASILVTSSSLRASTSNP 72
TF A RWV+AA V + L AS S+P
Sbjct: 2100 TFHAHRWVLAARSPVLKAKLSASPSSP 2126
>09_06_0103 + 20873310-20873382,20873530-20873735
Length = 92
Score = 28.7 bits (61), Expect = 6.4
Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
Frame = +3
Query: 330 VCRAHRCYAYC---GTFHTRCFY*PDPSCIP*TSSLDCI 437
+CR+ RC YC G RC + DPS ++ +C+
Sbjct: 45 LCRSTRCNQYCVSEGATRGRCGFSSDPSATALKNATECL 83
>02_05_0246 +
27136590-27138610,27138933-27139056,27139401-27139694,
27139776-27139978,27140307-27140589
Length = 974
Score = 28.7 bits (61), Expect = 6.4
Identities = 11/41 (26%), Positives = 16/41 (39%)
Frame = +1
Query: 727 VVPANQKXCSCPRNWNETWNQWLXGLKIPPRLXHPXXXLXW 849
V P S PR + TW+ W + PP++ W
Sbjct: 72 VSPNTDSTASTPRGASRTWSSWTNSPRSPPKVRRDGSVEFW 112
>08_01_0152 -
1190358-1190462,1190648-1190765,1191134-1192691,
1193338-1193530
Length = 657
Score = 28.3 bits (60), Expect = 8.4
Identities = 18/52 (34%), Positives = 25/52 (48%)
Frame = -3
Query: 334 QTSVQHADRRAVMR*RTHQRGSRWLRQHEQPEQVFPRYDAS*SHGYHQHVVC 179
+ SV + D+ ++ RT RGS L QPE + PRY+ H VC
Sbjct: 269 KNSVNNDDKPMLVSIRTKGRGSSTLPSIAQPEPL-PRYNKHWRRKAHSMCVC 319
>01_06_0902 +
32853708-32853739,32854787-32855596,32856094-32856157,
32856375-32856446
Length = 325
Score = 28.3 bits (60), Expect = 8.4
Identities = 12/36 (33%), Positives = 15/36 (41%)
Frame = +3
Query: 159 PDGDLCLQTTC*WYPCDQLASYLGKTCSGCSCCRSH 266
P +C+ T C C K CS CSC + H
Sbjct: 265 PQNSVCMVTLCTSEICSGRRYAAKKLCSACSCHKRH 300
>01_01_0409 -
3084821-3084988,3085069-3085155,3085270-3085476,
3085904-3085985,3086085-3086275,3086410-3086616,
3086709-3086871,3087905-3087960,3088035-3088148,
3088599-3089807
Length = 827
Score = 28.3 bits (60), Expect = 8.4
Identities = 22/78 (28%), Positives = 27/78 (34%)
Frame = +3
Query: 105 CHQNACCNHPSWGRKC*LPDGDLCLQTTC*WYPCDQLASYLGKTCSGCSCCRSHREPR*C 284
CH C P GR+ P G + CD A+ G TC C H+ P C
Sbjct: 324 CHAGKCGGCPLQGRRT-CPCGKKDYPSL----DCDAEAATCGSTCEKVLGCGRHKCPERC 378
Query: 285 VRHLITALRSACCTEVCR 338
R T+ CR
Sbjct: 379 HRGSCVETCRLVITKSCR 396
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,172,897
Number of Sequences: 37544
Number of extensions: 603133
Number of successful extensions: 1595
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1544
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1595
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2432722788
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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