Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP07_FL5_K09
(883 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccha... 146 5e-36
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 96 7e-21
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 59 9e-10
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 58 2e-09
SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces... 53 6e-08
SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm type|Schizos... 52 1e-07
SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyc... 50 4e-07
SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 48 2e-06
SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyce... 48 2e-06
SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|ch... 48 2e-06
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce... 47 3e-06
SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyce... 46 7e-06
SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual 44 2e-05
SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101 |Sch... 44 2e-05
SPBC18H10.03 |tif35||translation initiation factor eIF3g|Schizos... 44 4e-05
SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating tra... 43 7e-05
SPCC1827.05c |||nucleolar RNA-binding protein NIFK |Schizosaccha... 40 4e-04
SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding p... 40 4e-04
SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 40 6e-04
SPAC328.05 |||RNA-binding protein involved in export of mRNAs|Sc... 39 8e-04
SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p... 38 0.002
SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity... 38 0.003
SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein Sap49|Schizo... 37 0.003
SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po... 36 0.006
SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces po... 36 0.008
SPBC18H10.04c |sce3|tif48|translation initiation factor eIF4B|Sc... 36 0.010
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po... 35 0.013
SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyc... 35 0.018
SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces... 34 0.023
SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomy... 33 0.054
SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||... 33 0.071
SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomy... 33 0.071
SPBC8D2.09c |||U2 snRNP-associated protein Msl1 |Schizosaccharom... 31 0.22
SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces ... 30 0.50
SPBC13A2.01c |||nuclear cap-binding complex small subunit|Schizo... 29 0.88
SPAC57A7.13 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 28 2.0
SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protei... 27 2.7
SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein Msa1|Schizosa... 27 3.5
SPCC74.03c |ssp2|ucp9|serine/threonine protein kinase Ssp2|Schiz... 27 3.5
SPAC31A2.09c |apm4||AP-2 adaptor complex subunit Apm4 |Schizosac... 26 8.2
SPBC29A3.07c |||U2 snRNP-associated protein Sf3b14 homolog |Schi... 26 8.2
SPBC1D7.04 |mlo3||RNA annealing factor Mlo3|Schizosaccharomyces ... 26 8.2
SPCC1739.01 ||SPCC1906.05|zf-CCCH type zinc finger protein|Schiz... 26 8.2
SPAC16C9.04c |||CCR4-Not complex subunit Mot2 |Schizosaccharomyc... 26 8.2
>SPBC660.15 |||mRNA cleavage factor complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 474
Score = 146 bits (353), Expect = 5e-36
Identities = 64/141 (45%), Positives = 100/141 (70%)
Frame = +1
Query: 124 EKGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLVSLV 303
E GK+F+GGL+WET+ ++L+ YF ++GEV+DC VM++S +GRSRGFGF+TF +P V+ V
Sbjct: 161 EDGKMFIGGLNWETTDDSLRDYFEQFGEVLDCTVMRDSTTGRSRGFGFLTFKNPKCVNEV 220
Query: 304 LQNGPHQLDGRTIDPKPCNPRTLQKPKRGGGYPKVFLGGLPSNVTETDLRVFFGRYGKVM 483
+ H LDG+ IDPK PR Q+ K+F+GG+P + TE + R FF ++G+V+
Sbjct: 221 MSK-EHHLDGKIIDPKRAIPREEQEKT-----AKMFVGGVPGDCTEEEFRNFFNQFGRVL 274
Query: 484 EVVIMYDQEXKKSRGFGFLSF 546
+ +M D++ + RGFGF+++
Sbjct: 275 DATLMMDKDTGRPRGFGFVTY 295
Score = 67.7 bits (158), Expect = 2e-12
Identities = 27/90 (30%), Positives = 53/90 (58%)
Frame = +1
Query: 97 RMNPDMDDDEKGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTF 276
R P + ++ K+FVGG+ + ++E + +F+++G V+D +M + ++GR RGFGFVT+
Sbjct: 236 RAIPREEQEKTAKMFVGGVPGDCTEEEFRNFFNQFGRVLDATLMMDKDTGRPRGFGFVTY 295
Query: 277 ADPSLVSLVLQNGPHQLDGRTIDPKPCNPR 366
+ S V + + G+ ++ K P+
Sbjct: 296 ENESAVEATMSQPYITIHGKPVEVKRATPK 325
Score = 51.6 bits (118), Expect = 1e-07
Identities = 21/49 (42%), Positives = 34/49 (69%)
Frame = +1
Query: 403 KVFLGGLPSNVTETDLRVFFGRYGKVMEVVIMYDQEXKKSRGFGFLSFR 549
K+F+GGL T+ LR +F ++G+V++ +M D +SRGFGFL+F+
Sbjct: 164 KMFIGGLNWETTDDSLRDYFEQFGEVLDCTVMRDSTTGRSRGFGFLTFK 212
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 95.9 bits (228), Expect = 7e-21
Identities = 52/160 (32%), Positives = 83/160 (51%), Gaps = 13/160 (8%)
Frame = +1
Query: 106 PDMDDDEKGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADP 285
P D +E +FVG LSW + L + F YG ++ V+ + +SGRS+G+G+V F P
Sbjct: 255 PSQDSNETCTVFVGRLSWNVDDQWLGQEFEEYGTIVGARVIMDGQSGRSKGYGYVDFETP 314
Query: 286 SLV-SLVLQNGPHQLDGRTI-----DPKPCNPRTLQKPKRGG-----GYPK--VFLGGLP 426
+ V NG ++DGR + +P+P NP+ + + G P VF+G L
Sbjct: 315 EAAKAAVAANGTKEIDGRMVNLDLSNPRPANPQPYAQQRAGNFGDQLSEPSDTVFVGNLS 374
Query: 427 SNVTETDLRVFFGRYGKVMEVVIMYDQEXKKSRGFGFLSF 546
N TE DL FG G + + + D + + +GFG+++F
Sbjct: 375 FNATEDDLSTAFGGCGDIQSIRLPTDPQSGRLKGFGYVTF 414
Score = 49.6 bits (113), Expect = 6e-07
Identities = 28/96 (29%), Positives = 47/96 (48%)
Frame = +1
Query: 109 DMDDDEKGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPS 288
D + +FVG LS+ ++++L F G++ + + +SGR +GFG+VTF+D
Sbjct: 359 DQLSEPSDTVFVGNLSFNATEDDLSTAFGGCGDIQSIRLPTDPQSGRLKGFGYVTFSDID 418
Query: 289 LVSLVLQNGPHQLDGRTIDPKPCNPRTLQKPKRGGG 396
++ H + GR PC P+ GGG
Sbjct: 419 SAKKCVEMNGHFIAGR-----PCR-LDFSTPRTGGG 448
>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 674
Score = 58.8 bits (136), Expect = 9e-10
Identities = 42/135 (31%), Positives = 69/135 (51%), Gaps = 15/135 (11%)
Frame = +1
Query: 136 LFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFA---DPSLVSLVL 306
LFV L+++T Q++L +FS G + VV+ N E+G +RG+GFVTF+ D + L
Sbjct: 7 LFVRNLAFQTKQDDLTNFFSDVGPIKHAVVVTNPETGENRGYGFVTFSMLEDAQRAAKEL 66
Query: 307 QNGPHQLDGRTIDPKPCNPR-----------TLQKPKRGGGYPKVFLGGLPSNVTETD-L 450
+N +L GR + PR ++K R P++ + LP ++ + L
Sbjct: 67 KN--KKLHGRILRLDFATPRKRSEVDTDQNKAVKKTIRQDNRPRLIIRNLPWSIKKPQHL 124
Query: 451 RVFFGRYGKVMEVVI 495
F ++GKV E+ I
Sbjct: 125 EPHFSKFGKVREIKI 139
Score = 33.5 bits (73), Expect = 0.041
Identities = 14/47 (29%), Positives = 26/47 (55%)
Frame = +1
Query: 406 VFLGGLPSNVTETDLRVFFGRYGKVMEVVIMYDQEXKKSRGFGFLSF 546
+F+ L + DL FF G + V++ + E ++RG+GF++F
Sbjct: 7 LFVRNLAFQTKQDDLTNFFSDVGPIKHAVVVTNPETGENRGYGFVTF 53
Score = 28.3 bits (60), Expect = 1.5
Identities = 15/48 (31%), Positives = 24/48 (50%)
Frame = +1
Query: 406 VFLGGLPSNVTETDLRVFFGRYGKVMEVVIMYDQEXKKSRGFGFLSFR 549
VF+ L TE +L F ++G + ++ D +S G GF+ FR
Sbjct: 279 VFVRNLLFECTEQELYNHFRQFGPLAYAKLVKDPATDRSLGRGFIKFR 326
>SPAC57A7.04c |pabp||mRNA export shuttling protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 653
Score = 57.6 bits (133), Expect = 2e-09
Identities = 37/152 (24%), Positives = 71/152 (46%), Gaps = 4/152 (2%)
Frame = +1
Query: 103 NPDMDDDEKGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFAD 282
+P + G +F+ L + L FS +G+++ C V + E G ++G+GFV F
Sbjct: 159 DPSLRKMGTGNVFIKNLDPAIDNKALHDTFSAFGKILSCKVAVD-ELGNAKGYGFVHFDS 217
Query: 283 PSLVSLVLQ--NGPHQLDGRTIDPKPCNPRTLQKPKRG--GGYPKVFLGGLPSNVTETDL 450
+ ++ NG D + + R Q + V++ L + +TE +
Sbjct: 218 VESANAAIEHVNGMLLNDKKVYVGHHVSRRERQSKVEALKANFTNVYIKNLDTEITEQEF 277
Query: 451 RVFFGRYGKVMEVVIMYDQEXKKSRGFGFLSF 546
FG++G++ + ++ DQ K RGFGF+++
Sbjct: 278 SDLFGQFGEITSLSLVKDQN-DKPRGFGFVNY 308
Score = 42.3 bits (95), Expect = 9e-05
Identities = 35/152 (23%), Positives = 66/152 (43%), Gaps = 15/152 (9%)
Frame = +1
Query: 136 LFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLVSLVLQ-- 309
+++ L E +++ F ++GE+ ++K+ ++ + RGFGFV +A+ +
Sbjct: 263 VYIKNLDTEITEQEFSDLFGQFGEITSLSLVKD-QNDKPRGFGFVNYANHECAQKAVDEL 321
Query: 310 -----NGPHQLDGRTIDP--------KPCNPRTLQKPKRGGGYPKVFLGGLPSNVTETDL 450
G GR K L+K + G +F+ L V + L
Sbjct: 322 NDKEYKGKKLYVGRAQKKHEREEELRKRYEQMKLEKMNKYQGV-NLFIKNLQDEVDDERL 380
Query: 451 RVFFGRYGKVMEVVIMYDQEXKKSRGFGFLSF 546
+ F +G + IM D++ KS+GFGF+ +
Sbjct: 381 KAEFSAFGTITSAKIMTDEQG-KSKGFGFVCY 411
Score = 41.1 bits (92), Expect = 2e-04
Identities = 19/50 (38%), Positives = 28/50 (56%)
Frame = +1
Query: 136 LFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADP 285
LF+ L E E L+ FS +G + +M + E G+S+GFGFV + P
Sbjct: 366 LFIKNLQDEVDDERLKAEFSAFGTITSAKIMTD-EQGKSKGFGFVCYTTP 414
>SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 369
Score = 52.8 bits (121), Expect = 6e-08
Identities = 42/149 (28%), Positives = 68/149 (45%), Gaps = 14/149 (9%)
Frame = +1
Query: 160 ETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLVSLVLQNGPHQLDGRT 339
E S+EN++ + I + M + +++GF +V FA + L LQ L+GR
Sbjct: 135 EVSEENIKPITTEQITRIH-MPMSKEKRFQNKGFAYVDFATEDALKLALQCSEKALNGRN 193
Query: 340 I--------DPKPCNP-RTLQKPKRGGGYPK-----VFLGGLPSNVTETDLRVFFGRYGK 477
I +P P TL K K +F+G L T+ DL+ FG+ G+
Sbjct: 194 ILIKSNTDFSGRPSKPANTLSKTASIQSSKKEPSSILFVGNLDFETTDADLKEHFGQVGQ 253
Query: 478 VMEVVIMYDQEXKKSRGFGFLSFRG*NFC 564
+ V +M ++ K +GFGF+ F + C
Sbjct: 254 IRRVRLMTFEDTGKCKGFGFVDFPDIDTC 282
Score = 45.6 bits (103), Expect = 9e-06
Identities = 19/49 (38%), Positives = 32/49 (65%)
Frame = +1
Query: 136 LFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFAD 282
LFVG L +ET+ +L+ +F + G++ +M ++G+ +GFGFV F D
Sbjct: 230 LFVGNLDFETTDADLKEHFGQVGQIRRVRLMTFEDTGKCKGFGFVDFPD 278
>SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm
type|Schizosaccharomyces pombe|chr 2|||Manual
Length = 473
Score = 51.6 bits (118), Expect = 1e-07
Identities = 37/145 (25%), Positives = 64/145 (44%), Gaps = 4/145 (2%)
Frame = +1
Query: 124 EKGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLVSLV 303
+K L++G L ++ +Q+ ++ G+ + +++N +G + G+ FV FA P S
Sbjct: 91 QKTTLWMGELEPWVTEAFIQQVWNTLGKAVKVKLIRNRYTGMNAGYCFVEFASPHEASSA 150
Query: 304 LQNGPHQLDGRTIDPK---PCNPRTLQKPKRGGGYPKVFLGGLPSNVTETDL-RVFFGRY 471
+ + G K +K +F+G L NV E D+ +F RY
Sbjct: 151 MSMNNKPIPGTNHLFKLNWASGGGLREKSISKASEYSIFVGDLSPNVNEFDVYSLFASRY 210
Query: 472 GKVMEVVIMYDQEXKKSRGFGFLSF 546
IM D + SRG+GF+ F
Sbjct: 211 NSCKSAKIMTDPQTNVSRGYGFVRF 235
Score = 36.7 bits (81), Expect = 0.004
Identities = 46/164 (28%), Positives = 69/164 (42%), Gaps = 27/164 (16%)
Frame = +1
Query: 136 LFVGGLSWETSQENLQRYF-SRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLVSLVLQN 312
+FVG LS ++ ++ F SRY +M + ++ SRG+GFV F D + L
Sbjct: 188 IFVGDLSPNVNEFDVYSLFASRYNSCKSAKIMTDPQTNVSRGYGFVRFTDENDQKSALAE 247
Query: 313 GPHQLDG-RTI-----DPK-------PCNPRTLQKPKRG---GGYP----------KVFL 414
Q+ G R I PK P N + P G P VF+
Sbjct: 248 MQGQICGDRPIRVGLATPKSKAHVFSPVNVVPVSMPPVGFYSAAQPVPQFADTANSTVFV 307
Query: 415 GGLPSNVTETDLRVFFGRYGKVMEVVIMYDQEXKKSRGFGFLSF 546
GGL V+E +L+ F +G+++ V I +G GF+ F
Sbjct: 308 GGLSKFVSEEELKYLFQNFGEIVYVKI------PPGKGCGFVQF 345
Score = 33.5 bits (73), Expect = 0.041
Identities = 19/59 (32%), Positives = 28/59 (47%)
Frame = +1
Query: 106 PDMDDDEKGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFAD 282
P D +FVGGLS S+E L+ F +GE++ + +G GFV F +
Sbjct: 295 PQFADTANSTVFVGGLSKFVSEEELKYLFQNFGEIVYVKIPP------GKGCGFVQFVN 347
>SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 438
Score = 50.0 bits (114), Expect = 4e-07
Identities = 29/97 (29%), Positives = 50/97 (51%), Gaps = 4/97 (4%)
Frame = +1
Query: 112 MDDDEKGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSL 291
M D K +FVG L++E +E L RYF G + ++++ ++ +GF ++ F D
Sbjct: 264 MPQDTKRCVFVGNLAFEAEEEPLWRYFGDCGSIDYVRIVRDPKTNLGKGFAYIQFKDTMG 323
Query: 292 V-SLVLQNGPHQLDGRTI---DPKPCNPRTLQKPKRG 390
V +L N +GRT+ K P+++ + KRG
Sbjct: 324 VDKALLLNEKKMPEGRTLRIMRAKSTKPKSITRSKRG 360
Score = 31.1 bits (67), Expect = 0.22
Identities = 15/48 (31%), Positives = 24/48 (50%)
Frame = +1
Query: 406 VFLGGLPSNVTETDLRVFFGRYGKVMEVVIMYDQEXKKSRGFGFLSFR 549
VF+G L E L +FG G + V I+ D + +GF ++ F+
Sbjct: 272 VFVGNLAFEAEEEPLWRYFGDCGSIDYVRIVRDPKTNLGKGFAYIQFK 319
>SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 233
Score = 47.6 bits (108), Expect = 2e-06
Identities = 23/57 (40%), Positives = 34/57 (59%)
Frame = +1
Query: 115 DDDEKGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADP 285
++D K LFVG L ++S E LQ +F R G+V + + SGR +G+ FV F +P
Sbjct: 87 NNDRKVILFVGNLPKDSSVETLQLHFKRAGQVPSVRIPTDKTSGRQKGYAFVEFINP 143
>SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 217
Score = 47.6 bits (108), Expect = 2e-06
Identities = 17/66 (25%), Positives = 40/66 (60%)
Frame = +1
Query: 115 DDDEKGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLV 294
D + +++G L ++ +++++ FS +GE +D ++++ E+G+S+GF F+ + D
Sbjct: 26 DYSDSAYIYIGNLDFDLNEDDILCVFSEFGEPVDINLVRDKETGKSKGFAFLKYEDQRST 85
Query: 295 SLVLQN 312
L + N
Sbjct: 86 VLAVDN 91
Score = 39.5 bits (88), Expect = 6e-04
Identities = 14/47 (29%), Positives = 30/47 (63%)
Frame = +1
Query: 406 VFLGGLPSNVTETDLRVFFGRYGKVMEVVIMYDQEXKKSRGFGFLSF 546
+++G L ++ E D+ F +G+ +++ ++ D+E KS+GF FL +
Sbjct: 33 IYIGNLDFDLNEDDILCVFSEFGEPVDINLVRDKETGKSKGFAFLKY 79
>SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 219
Score = 47.6 bits (108), Expect = 2e-06
Identities = 36/111 (32%), Positives = 56/111 (50%), Gaps = 10/111 (9%)
Frame = +1
Query: 118 DDEKGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTF--ADPSL 291
D +LFVG L + + E+L + FS Y ++ V+++ E G++RGFGFV+F +D L
Sbjct: 26 DPNHFRLFVGNLGNDVNDESLYQAFSEYPSLVKTKVVRDRE-GKTRGFGFVSFKDSDQFL 84
Query: 292 VSLVLQNG------PHQLDGRTIDPKP--CNPRTLQKPKRGGGYPKVFLGG 420
+ +NG P +L T D KP N +T+ R Y + G
Sbjct: 85 KAWREKNGKYIGSRPVKLSRATSDVKPNEVNEKTIDSKIRNSLYSRTIHHG 135
Score = 38.3 bits (85), Expect = 0.001
Identities = 17/49 (34%), Positives = 32/49 (65%)
Frame = +1
Query: 403 KVFLGGLPSNVTETDLRVFFGRYGKVMEVVIMYDQEXKKSRGFGFLSFR 549
++F+G L ++V + L F Y +++ ++ D+E K+RGFGF+SF+
Sbjct: 31 RLFVGNLGNDVNDESLYQAFSEYPSLVKTKVVRDREG-KTRGFGFVSFK 78
>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 604
Score = 47.2 bits (107), Expect = 3e-06
Identities = 31/155 (20%), Positives = 70/155 (45%), Gaps = 10/155 (6%)
Frame = +1
Query: 115 DDDEKGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLV 294
++ ++ +FV L+ + L +F + G V D ++++ SGRS+G +V F V
Sbjct: 235 EERDRRTVFVSQLANRLTSRELYDFFEQAGPVRDAQIVRDKISGRSKGVAYVEFCHEDSV 294
Query: 295 SLVLQNGPHQLDGRTIDPKPCNPRTLQKPKRGG----------GYPKVFLGGLPSNVTET 444
+ +L G + + +K + + ++ + + N+T+
Sbjct: 295 QAAIALSGKRLLGLPVIVQLTEAEKNRKAREAAELARAASAEIPFHRLCVSNIHFNLTDE 354
Query: 445 DLRVFFGRYGKVMEVVIMYDQEXKKSRGFGFLSFR 549
D++ F +G + E V + + +S+GFG++ +R
Sbjct: 355 DVKAIFEPFGDI-EFVHLQRDDQNRSKGFGYIQYR 388
Score = 33.9 bits (74), Expect = 0.031
Identities = 13/51 (25%), Positives = 31/51 (60%)
Frame = +1
Query: 133 KLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADP 285
+L V + + + E+++ F +G+ I+ V ++ + RS+GFG++ + +P
Sbjct: 341 RLCVSNIHFNLTDEDVKAIFEPFGD-IEFVHLQRDDQNRSKGFGYIQYRNP 390
>SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 297
Score = 46.0 bits (104), Expect = 7e-06
Identities = 21/47 (44%), Positives = 30/47 (63%)
Frame = +1
Query: 406 VFLGGLPSNVTETDLRVFFGRYGKVMEVVIMYDQEXKKSRGFGFLSF 546
+F+ G+ S + E +L+ F ++G V V IM + K SRGFGFLSF
Sbjct: 103 LFVSGIASRMQEDELQQIFSKFGTVTHVRIMREPVTKASRGFGFLSF 149
Score = 45.6 bits (103), Expect = 9e-06
Identities = 24/96 (25%), Positives = 46/96 (47%), Gaps = 1/96 (1%)
Frame = +1
Query: 106 PDMDDDEKGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADP 285
P+ ++ LFV G++ ++ LQ+ FS++G V +M+ + SRGFGF++F+
Sbjct: 93 PEGSENLGNDLFVSGIASRMQEDELQQIFSKFGTVTHVRIMREPVTKASRGFGFLSFSTV 152
Query: 286 SLVSLVLQN-GPHQLDGRTIDPKPCNPRTLQKPKRG 390
+ + N + GR ++ + P G
Sbjct: 153 EEATSAIDNLNSQEFYGRVLNVQKAKRSRPHSPTPG 188
>SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual
Length = 166
Score = 44.4 bits (100), Expect = 2e-05
Identities = 20/70 (28%), Positives = 40/70 (57%), Gaps = 1/70 (1%)
Frame = +1
Query: 109 DMDDDEKGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPS 288
D + + ++VG + + + E LQ +F+ G V ++ + +G +GF ++ F++PS
Sbjct: 48 DKESIDAQSVYVGNVDYSVTPEELQSHFASCGSVNRVTILCDKFTGHPKGFAYIEFSEPS 107
Query: 289 LV-SLVLQNG 315
LV + +L NG
Sbjct: 108 LVPNALLLNG 117
>SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 261
Score = 44.4 bits (100), Expect = 2e-05
Identities = 17/47 (36%), Positives = 32/47 (68%)
Frame = +1
Query: 136 LFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTF 276
+F+ LS++T + +++R F+RYG + V++N +G+S G+ FV F
Sbjct: 102 MFLSRLSYDTKESDIEREFTRYGPIERIRVVRNKVTGKSMGYAFVVF 148
Score = 34.3 bits (75), Expect = 0.023
Identities = 16/53 (30%), Positives = 28/53 (52%)
Frame = +1
Query: 388 GGGYPKVFLGGLPSNVTETDLRVFFGRYGKVMEVVIMYDQEXKKSRGFGFLSF 546
G Y +FL L + E+D+ F RYG + + ++ ++ KS G+ F+ F
Sbjct: 96 GDPYKTMFLSRLSYDTKESDIEREFTRYGPIERIRVVRNKVTGKSMGYAFVVF 148
>SPBC18H10.03 |tif35||translation initiation factor
eIF3g|Schizosaccharomyces pombe|chr 2|||Manual
Length = 282
Score = 43.6 bits (98), Expect = 4e-05
Identities = 20/54 (37%), Positives = 33/54 (61%)
Frame = +1
Query: 121 DEKGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFAD 282
D+ L V LS +T +E L+ F R+G + + K+ E+GR++GF FV++ D
Sbjct: 199 DDSATLRVTNLSDDTREEELRDLFRRFGGIQRVYLAKDKETGRAKGFAFVSYYD 252
Score = 34.7 bits (76), Expect = 0.018
Identities = 14/42 (33%), Positives = 25/42 (59%)
Frame = +1
Query: 421 LPSNVTETDLRVFFGRYGKVMEVVIMYDQEXKKSRGFGFLSF 546
L + E +LR F R+G + V + D+E +++GF F+S+
Sbjct: 209 LSDDTREEELRDLFRRFGGIQRVYLAKDKETGRAKGFAFVSY 250
>SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating
transcription Rct1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 432
Score = 42.7 bits (96), Expect = 7e-05
Identities = 19/47 (40%), Positives = 31/47 (65%)
Frame = +1
Query: 136 LFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTF 276
LFV L+ T E+L+ FSR+G++I C V+++ E+G S + F+ F
Sbjct: 246 LFVCKLNPVTQDEDLELIFSRFGKIISCQVIRDKETGDSLQYAFIEF 292
Score = 30.3 bits (65), Expect = 0.38
Identities = 11/36 (30%), Positives = 21/36 (58%)
Frame = +1
Query: 439 ETDLRVFFGRYGKVMEVVIMYDQEXKKSRGFGFLSF 546
+ DL + F R+GK++ ++ D+E S + F+ F
Sbjct: 257 DEDLELIFSRFGKIISCQVIRDKETGDSLQYAFIEF 292
>SPCC1827.05c |||nucleolar RNA-binding protein NIFK
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 276
Score = 40.3 bits (90), Expect = 4e-04
Identities = 17/62 (27%), Positives = 37/62 (59%)
Frame = +1
Query: 124 EKGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLVSLV 303
+KG L+VG L ++ ++ YFS++G V+ + +N ++G S+ + F+ F + ++V
Sbjct: 103 KKGVLYVGRLPHGFYEKQMRMYFSQFGPVLRLRMSRNRKTGSSKHYAFIEFESLDVANVV 162
Query: 304 LQ 309
+
Sbjct: 163 AE 164
>SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding
protein 1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 567
Score = 40.3 bits (90), Expect = 4e-04
Identities = 32/134 (23%), Positives = 63/134 (47%)
Frame = +1
Query: 136 LFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLVSLVLQNG 315
+++ GL TS ENL Y +R+G+V + + E+ +G+GF F + +L+ +
Sbjct: 298 VYIRGLPPNTSDENLLLYTNRFGKVSSSKAIIDMETNLCKGYGFACFEEEK-SALICISA 356
Query: 316 PHQLDGRTIDPKPCNPRTLQKPKRGGGYPKVFLGGLPSNVTETDLRVFFGRYGKVMEVVI 495
+ K LQ + +++ LP + E+D+ F + K++ +
Sbjct: 357 MTLCGYQCSFAKESFSARLQS-LQDTESTNLYISNLPLHWNESDISTLF-KPSKIISNRV 414
Query: 496 MYDQEXKKSRGFGF 537
+ D + ++SRG GF
Sbjct: 415 LRDSK-EQSRGVGF 427
Score = 39.1 bits (87), Expect = 8e-04
Identities = 16/47 (34%), Positives = 27/47 (57%)
Frame = +1
Query: 406 VFLGGLPSNVTETDLRVFFGRYGKVMEVVIMYDQEXKKSRGFGFLSF 546
V++ GLP N ++ +L ++ R+GKV + D E +G+GF F
Sbjct: 298 VYIRGLPPNTSDENLLLYTNRFGKVSSSKAIIDMETNLCKGYGFACF 344
>SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 422
Score = 39.5 bits (88), Expect = 6e-04
Identities = 27/99 (27%), Positives = 49/99 (49%), Gaps = 7/99 (7%)
Frame = +1
Query: 136 LFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLVSLVLQNG 315
++VG + +E ++E + F + G V ++ + ESG+ +G+GF + DP+ + ++N
Sbjct: 7 VYVGNIPYEMAEEQVIDIFKQSGPVKSFQLVIDPESGQPKGYGFCEYHDPATAASAVRNL 66
Query: 316 PHQLDG----RTIDPKPCNPRTLQK---PKRGGGYPKVF 411
+ G R P R L K P R G YP+ +
Sbjct: 67 NNYDAGTRRLRVDFPTADQIRRLDKLLGPSRYGYYPQSY 105
>SPAC328.05 |||RNA-binding protein involved in export of
mRNAs|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 39.1 bits (87), Expect = 8e-04
Identities = 20/47 (42%), Positives = 26/47 (55%)
Frame = +1
Query: 136 LFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTF 276
++VG L W TS NL F+ G VI + +GRS+GFG V F
Sbjct: 282 IYVGNLPWATSDRNLLDLFTDIGSVIRARI-AYEPTGRSKGFGVVQF 327
Score = 31.9 bits (69), Expect = 0.12
Identities = 12/52 (23%), Positives = 31/52 (59%)
Frame = +1
Query: 124 EKGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFA 279
++ +++VG LS++ L+ + + G V++C ++ N +G S+G + ++
Sbjct: 64 QERRVYVGNLSYQVRWFELKEFMGQVGNVLNCEIL-NLPNGLSKGCAIIEYS 114
>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 517
Score = 37.9 bits (84), Expect = 0.002
Identities = 15/56 (26%), Positives = 29/56 (51%)
Frame = +1
Query: 121 DEKGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPS 288
D K K+++ L ++ + +G+++ ++KN G S+GF F F +PS
Sbjct: 307 DSKDKIYISNLPLNLGEDQVVELLKPFGDLLSFQLIKNIADGSSKGFCFCEFKNPS 362
>SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity
factor complex subunit Ctf1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 363
Score = 37.5 bits (83), Expect = 0.003
Identities = 14/58 (24%), Positives = 33/58 (56%)
Frame = +1
Query: 136 LFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLVSLVLQ 309
+FVG + ++ S++ + F++ G V ++ + E+G +G+GF F D ++ ++
Sbjct: 9 VFVGNIPYDVSEQQMTEIFNQVGPVKTFKLVLDPETGSGKGYGFCEFFDSETTAMAVR 66
Score = 36.3 bits (80), Expect = 0.006
Identities = 15/47 (31%), Positives = 25/47 (53%)
Frame = +1
Query: 406 VFLGGLPSNVTETDLRVFFGRYGKVMEVVIMYDQEXKKSRGFGFLSF 546
VF+G +P +V+E + F + G V ++ D E +G+GF F
Sbjct: 9 VFVGNIPYDVSEQQMTEIFNQVGPVKTFKLVLDPETGSGKGYGFCEF 55
>SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein
Sap49|Schizosaccharomyces pombe|chr 1|||Manual
Length = 335
Score = 37.1 bits (82), Expect = 0.003
Identities = 17/47 (36%), Positives = 27/47 (57%)
Frame = +1
Query: 136 LFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTF 276
LFVG L + L FS G+++ + E+GRS+G+GFV++
Sbjct: 101 LFVGNLDPLVDERVLYDTFSALGQLVKAPQVARDENGRSKGYGFVSY 147
Score = 32.7 bits (71), Expect = 0.071
Identities = 31/145 (21%), Positives = 59/145 (40%), Gaps = 1/145 (0%)
Frame = +1
Query: 115 DDDEKGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLV 294
D ++ +++G L + + L + G V++ + ++ GFGF F V
Sbjct: 6 DRNQDATIYLGNLDEKVTDSILFELCLQAGPVVNIHIPRDRVRNSHNGFGFCEFLHEQDV 65
Query: 295 SLVLQN-GPHQLDGRTIDPKPCNPRTLQKPKRGGGYPKVFLGGLPSNVTETDLRVFFGRY 471
Q +L G+ I + G +F+G L V E L F
Sbjct: 66 EYACQILNQVKLFGKPIRVNRASQDRGVNTLIGAN---LFVGNLDPLVDERVLYDTFSAL 122
Query: 472 GKVMEVVIMYDQEXKKSRGFGFLSF 546
G++++ + E +S+G+GF+S+
Sbjct: 123 GQLVKAPQVARDENGRSKGYGFVSY 147
>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1014
Score = 36.3 bits (80), Expect = 0.006
Identities = 30/124 (24%), Positives = 54/124 (43%), Gaps = 2/124 (1%)
Frame = +1
Query: 175 NLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLVSLVLQNGPHQLDGRTIDPKP 354
++ + FS YG V+D V + +R F +V P LQ L+ +
Sbjct: 681 DITKLFSAYGNVVD-VRFPSLRYNTNRRFCYVQMRKPDEAHNALQLHKKLLEEKYPIQVF 739
Query: 355 CNPRTLQKPKRGGGYP--KVFLGGLPSNVTETDLRVFFGRYGKVMEVVIMYDQEXKKSRG 528
+ + P+ G Y ++++ + V E D+ FF YG+V V I + + +G
Sbjct: 740 ISDPLRRTPRSGAVYEGRELYVTNIDFKVNEKDVETFFRDYGQVESVRI--PKRFNQHKG 797
Query: 529 FGFL 540
FG++
Sbjct: 798 FGYV 801
Score = 31.9 bits (69), Expect = 0.12
Identities = 11/35 (31%), Positives = 23/35 (65%)
Frame = +1
Query: 406 VFLGGLPSNVTETDLRVFFGRYGKVMEVVIMYDQE 510
V + LPS+++E +L++FF G ++ + I+ D +
Sbjct: 592 VLVTNLPSDISENELKIFFKDCGNIIRIFILEDNQ 626
>SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 365
Score = 35.9 bits (79), Expect = 0.008
Identities = 17/50 (34%), Positives = 29/50 (58%)
Frame = +1
Query: 133 KLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFAD 282
+LFVG + + ++E++ +F YG+++DC +M GFGFV D
Sbjct: 5 RLFVGRIPPQATREDMMDFFKGYGQILDCKLM--------NGFGFVEVED 46
Score = 29.5 bits (63), Expect = 0.66
Identities = 10/32 (31%), Positives = 20/32 (62%)
Frame = +1
Query: 403 KVFLGGLPSNVTETDLRVFFGRYGKVMEVVIM 498
++F+G +P T D+ FF YG++++ +M
Sbjct: 5 RLFVGRIPPQATREDMMDFFKGYGQILDCKLM 36
>SPBC18H10.04c |sce3|tif48|translation initiation factor
eIF4B|Schizosaccharomyces pombe|chr 2|||Manual
Length = 388
Score = 35.5 bits (78), Expect = 0.010
Identities = 24/75 (32%), Positives = 35/75 (46%)
Frame = +1
Query: 142 VGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLVSLVLQNGPH 321
VG LS++ ++ +L +F I V+ +E RSRGFG+V F +S L
Sbjct: 98 VGNLSFDLTENDLGDFFGEGVTSIRLVIDPLTE--RSRGFGYVEFETADTLSAALALSGE 155
Query: 322 QLDGRTIDPKPCNPR 366
L GR + PR
Sbjct: 156 DLMGRPVRITVAEPR 170
Score = 33.9 bits (74), Expect = 0.031
Identities = 17/45 (37%), Positives = 27/45 (60%)
Frame = +1
Query: 412 LGGLPSNVTETDLRVFFGRYGKVMEVVIMYDQEXKKSRGFGFLSF 546
+G L ++TE DL FFG V + ++ D ++SRGFG++ F
Sbjct: 98 VGNLSFDLTENDLGDFFGE--GVTSIRLVIDPLTERSRGFGYVEF 140
>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 833
Score = 35.1 bits (77), Expect = 0.013
Identities = 14/48 (29%), Positives = 28/48 (58%)
Frame = +1
Query: 403 KVFLGGLPSNVTETDLRVFFGRYGKVMEVVIMYDQEXKKSRGFGFLSF 546
++FL L + E DL+ FG +G++ +V + D++ +GF ++ F
Sbjct: 324 RLFLRNLTYSCAEDDLKSLFGPFGQLEQVHMPIDKKTNNPKGFAYIDF 371
>SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 529
Score = 34.7 bits (76), Expect = 0.018
Identities = 28/112 (25%), Positives = 50/112 (44%), Gaps = 11/112 (9%)
Frame = +1
Query: 205 EVIDCVVMKNSESG---RSRGFGFVTFADPSLVSLVLQNGP-HQLDGRTIDPK------- 351
E++ CV ES + F++F DPS + Q+ +L R + K
Sbjct: 130 EILSCVRTGPIESAWILPEKNCAFISFLDPSHATAFFQDAALKRLTIRGTEVKVGWGKNS 189
Query: 352 PCNPRTLQKPKRGGGYPKVFLGGLPSNVTETDLRVFFGRYGKVMEVVIMYDQ 507
N L ++ G VFLG LP+ +TE ++R +G + ++ I+ ++
Sbjct: 190 ASNSSVLLAVQQSGACRNVFLGNLPNGITEDEIREDLEPFGPIDQIKIVTER 241
>SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 609
Score = 34.3 bits (75), Expect = 0.023
Identities = 12/38 (31%), Positives = 23/38 (60%)
Frame = +1
Query: 172 ENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADP 285
+ L+ FS++G + C + + S+G+GFV+F+ P
Sbjct: 435 QQLEELFSKFGRIKSCTLASYPSTEISKGYGFVSFSHP 472
Score = 26.2 bits (55), Expect = 6.2
Identities = 12/49 (24%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
Frame = +1
Query: 406 VFLGGLPSNVTET--DLRVFFGRYGKVMEVVIMYDQEXKKSRGFGFLSF 546
+F+ L N+ L F ++G++ + + S+G+GF+SF
Sbjct: 421 LFVKNLDDNIVGNTQQLEELFSKFGRIKSCTLASYPSTEISKGYGFVSF 469
>SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 478
Score = 33.1 bits (72), Expect = 0.054
Identities = 15/49 (30%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
Frame = +1
Query: 133 KLFVGGLSWETSQENLQRYFSRYGEVIDC-VVMKNSESGRSRGFGFVTF 276
+++VGGLS +L+ FSR+G V + ++ K++ G + F ++ F
Sbjct: 6 RIYVGGLSSSIESSDLESRFSRFGSVSNLEIINKSTPVGTIQRFAYLNF 54
Score = 31.9 bits (69), Expect = 0.12
Identities = 15/50 (30%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Frame = +1
Query: 403 KVFLGGLPSNVTETDLRVFFGRYGKVMEV-VIMYDQEXKKSRGFGFLSFR 549
++++GGL S++ +DL F R+G V + +I + F +L+FR
Sbjct: 6 RIYVGGLSSSIESSDLESRFSRFGSVSNLEIINKSTPVGTIQRFAYLNFR 55
>SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr
1|||Manual
Length = 710
Score = 32.7 bits (71), Expect = 0.071
Identities = 12/35 (34%), Positives = 21/35 (60%)
Frame = +1
Query: 106 PDMDDDEKGKLFVGGLSWETSQENLQRYFSRYGEV 210
P +DE ++VG + S E + ++FS+YG+V
Sbjct: 9 PGQYEDESSTIYVGNIDSRLSDEEIIKHFSKYGQV 43
Score = 31.5 bits (68), Expect = 0.16
Identities = 13/38 (34%), Positives = 22/38 (57%)
Frame = +1
Query: 163 TSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTF 276
T + L+ FS +G ++ ++ SG S+G+GFV F
Sbjct: 395 TCKSQLEDLFSPFGSILSSMLACYPNSGISKGYGFVAF 432
>SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 654
Score = 32.7 bits (71), Expect = 0.071
Identities = 12/31 (38%), Positives = 21/31 (67%)
Frame = +1
Query: 406 VFLGGLPSNVTETDLRVFFGRYGKVMEVVIM 498
VF+G LPS+ E ++ FG++GK+ + I+
Sbjct: 301 VFIGNLPSSYHEKEIEEAFGKFGKIEHIKIL 331
>SPBC8D2.09c |||U2 snRNP-associated protein Msl1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 111
Score = 31.1 bits (67), Expect = 0.22
Identities = 16/44 (36%), Positives = 24/44 (54%)
Frame = +1
Query: 178 LQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLVSLVLQ 309
L FS YG V+D V +K + + RG V F DPS ++ ++
Sbjct: 24 LYMLFSTYGTVVDIVALK---TPKMRGQAHVVFFDPSAAAIAMK 64
>SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 29.9 bits (64), Expect = 0.50
Identities = 12/33 (36%), Positives = 21/33 (63%)
Frame = +1
Query: 406 VFLGGLPSNVTETDLRVFFGRYGKVMEVVIMYD 504
+FLGG+ +V E LR F R+G V +++ ++
Sbjct: 408 LFLGGITRSVREPVLRSMFERFGSVQSLILNHN 440
>SPBC13A2.01c |||nuclear cap-binding complex small
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 182
Score = 29.1 bits (62), Expect = 0.88
Identities = 14/47 (29%), Positives = 27/47 (57%)
Frame = +1
Query: 136 LFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTF 276
++VG LS+ T++E + FS+ GE+ ++ + + GF FV +
Sbjct: 34 VYVGNLSFYTTEEQIYALFSKCGEIRRIIMGVDRFTKTPCGFCFVEY 80
>SPAC57A7.13 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 565
Score = 27.9 bits (59), Expect = 2.0
Identities = 24/86 (27%), Positives = 38/86 (44%), Gaps = 4/86 (4%)
Frame = +1
Query: 301 VLQNGPHQLDGRTIDPKPCNPRTLQKP-KRGGGYP--KVFLGGLPSNVTETDLRV-FFGR 468
+ + P LD + PK R P R G P ++ L GL + E + + +
Sbjct: 37 ISSDNPRLLD--SYRPKGNYGRDRNSPLSRHIGVPNQEIILQGLTPEILEEHIELALYAT 94
Query: 469 YGKVMEVVIMYDQEXKKSRGFGFLSF 546
KV V ++ ++E +KSR F F F
Sbjct: 95 GAKVSTVTLIREKETQKSRCFAFAKF 120
>SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protein
Tgc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 348
Score = 27.5 bits (58), Expect = 2.7
Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 12/61 (19%)
Frame = +1
Query: 136 LFVGGLSWETSQENLQRYFSRYGEVIDCVVMKN------------SESGRSRGFGFVTFA 279
++V GLS + E L+ F Y + +++ E R RGFGFV+FA
Sbjct: 207 IYVSGLSVTLTNEGLKEMFDAYNPTRARIAVRSLPPYIIRRIKLRGEQRRGRGFGFVSFA 266
Query: 280 D 282
+
Sbjct: 267 N 267
>SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein
Msa1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 533
Score = 27.1 bits (57), Expect = 3.5
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +1
Query: 190 FSRYGEVIDCVVMKNSESGRSRGFGFVTF 276
FS+YG+VIDC ++ S + F F+ F
Sbjct: 386 FSKYGKVIDCKIIHQS---KKPAFAFLRF 411
>SPCC74.03c |ssp2|ucp9|serine/threonine protein kinase
Ssp2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 576
Score = 27.1 bits (57), Expect = 3.5
Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Frame = +2
Query: 416 AGCHRTLPKPISG-YFSDAMGRSWRWSLCMIKR 511
AG T+PKP++G Y SD RW + KR
Sbjct: 476 AGAQFTVPKPVNGKYRSDMYTIKSRWEIPHCKR 508
>SPAC31A2.09c |apm4||AP-2 adaptor complex subunit Apm4
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 446
Score = 25.8 bits (54), Expect = 8.2
Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
Frame = +3
Query: 351 AVQSSHSSKTE--TWRWIP*GVPWRAAIERYRNRS 449
+++ SHSS+ T IP VPWR A +YR S
Sbjct: 145 SLKRSHSSQLAHTTSSEIPGSVPWRRAGIKYRKNS 179
>SPBC29A3.07c |||U2 snRNP-associated protein Sf3b14 homolog
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 137
Score = 25.8 bits (54), Expect = 8.2
Identities = 14/47 (29%), Positives = 25/47 (53%)
Frame = +1
Query: 136 LFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTF 276
LF+ LS++ + E + F RYG V ++ + ++RG FV +
Sbjct: 14 LFIKNLSFKITAEEMYDLFGRYGPVRQ---IRLGNTVQTRGTAFVVY 57
>SPBC1D7.04 |mlo3||RNA annealing factor Mlo3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 199
Score = 25.8 bits (54), Expect = 8.2
Identities = 16/74 (21%), Positives = 33/74 (44%)
Frame = +1
Query: 124 EKGKLFVGGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLVSLV 303
E+ K+ V L + ++ ++ F + V + +GRS+G + F+ P +
Sbjct: 53 EESKIIVSNLPTDVTEAQVKELFVKSIGPCKRVSLAYGPNGRSKGIATIIFSRPGDATRA 112
Query: 304 LQNGPHQLDGRTID 345
+ Q +GR +D
Sbjct: 113 YE----QYEGRLVD 122
>SPCC1739.01 ||SPCC1906.05|zf-CCCH type zinc finger
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 547
Score = 25.8 bits (54), Expect = 8.2
Identities = 17/58 (29%), Positives = 27/58 (46%)
Frame = +1
Query: 145 GGLSWETSQENLQRYFSRYGEVIDCVVMKNSESGRSRGFGFVTFADPSLVSLVLQNGP 318
G L + + EN + YFSR +++ + S + +T DP SL LQ+ P
Sbjct: 246 GLLFQQMTSENNRDYFSRRPTLLNTYGNRCSSTDTLSSLSRLTSQDPLKASLPLQSPP 303
>SPAC16C9.04c |||CCR4-Not complex subunit Mot2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 489
Score = 25.8 bits (54), Expect = 8.2
Identities = 14/51 (27%), Positives = 27/51 (52%), Gaps = 6/51 (11%)
Frame = +1
Query: 124 EKGKLFVGGLSWETS-QENLQ-----RYFSRYGEVIDCVVMKNSESGRSRG 258
+K +V GLS + + +EN+ YF +YG++I + K + + + G
Sbjct: 114 QKNLAYVNGLSPKVANEENINVLKGPEYFGQYGKIIKIAINKKAAANSANG 164
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,142,488
Number of Sequences: 5004
Number of extensions: 62079
Number of successful extensions: 221
Number of sequences better than 10.0: 44
Number of HSP's better than 10.0 without gapping: 167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 212
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 442483990
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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