Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP07_FL5_K08
         (874 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.01 |did4|SPAC644.03c, vps2|vacuolar sorting protein Did4...    29   0.65 
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    29   1.1  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    28   2.0  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    27   3.5  

>SPAC4F8.01 |did4|SPAC644.03c, vps2|vacuolar sorting protein
           Did4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 210

 Score = 29.5 bits (63), Expect = 0.65
 Identities = 11/25 (44%), Positives = 18/25 (72%)
 Frame = +1

Query: 208 VRVHRANTGRSSNELDRQTTDLERR 282
           +R H+ + GR+  ELDR+ T L++R
Sbjct: 18  LRAHQRSLGRAERELDRERTKLDQR 42


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 15/44 (34%), Positives = 16/44 (36%)
 Frame = +3

Query: 678  PXKXPPXPPXXXAGPGFXXXXPPPPXXXRXXXXPPPXXPGLXRG 809
            P   PP  P   A P      PPPP        PPP  P +  G
Sbjct: 1686 PVSTPPVRPQSAAPPQMSAPTPPPPP---MSVPPPPSAPPMPAG 1726


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 11/21 (52%), Positives = 11/21 (52%)
 Frame = +3

Query: 690 PPXPPXXXAGPGFXXXXPPPP 752
           PP PP   AG G     PPPP
Sbjct: 763 PPPPPPGVAGAGPPPPPPPPP 783



 Score = 27.1 bits (57), Expect = 3.5
 Identities = 14/52 (26%), Positives = 16/52 (30%)
 Frame = +2

Query: 629 PXPXXXXPLAXVPECXSGKTPPXXPXLXGXXRXPXXXAPAPXXPXPXXPPXP 784
           P P     +   P       PP  P + G    P     A   P P  PP P
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPP 783



 Score = 26.6 bits (56), Expect = 4.6
 Identities = 12/37 (32%), Positives = 13/37 (35%)
 Frame = +3

Query: 690 PPXPPXXXAGPGFXXXXPPPPXXXRXXXXPPPXXPGL 800
           PP P      P       PPP        PPP  PG+
Sbjct: 734 PPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGV 770



 Score = 26.2 bits (55), Expect = 6.1
 Identities = 12/36 (33%), Positives = 13/36 (36%)
 Frame = +1

Query: 700 PPPXGXXPXSXXXCPRPXPPXAXXAXXPLEXPXSPG 807
           PPP      +    P P PP A     P   P  PG
Sbjct: 734 PPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPG 769



 Score = 25.8 bits (54), Expect = 8.1
 Identities = 12/41 (29%), Positives = 13/41 (31%)
 Frame = +3

Query: 672 VXPXKXPPXPPXXXAGPGFXXXXPPPPXXXRXXXXPPPXXP 794
           + P   P   P     P      PPPP        PPP  P
Sbjct: 740 IVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPP 780


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 11/26 (42%), Positives = 11/26 (42%)
 Frame = +3

Query: 720 PGFXXXXPPPPXXXRXXXXPPPXXPG 797
           PG     PPPP        PPP  PG
Sbjct: 6   PGNPPPPPPPPGFEPPSQPPPPPPPG 31



 Score = 26.6 bits (56), Expect = 4.6
 Identities = 12/43 (27%), Positives = 15/43 (34%)
 Frame = +3

Query: 669 NVXPXKXPPXPPXXXAGPGFXXXXPPPPXXXRXXXXPPPXXPG 797
           ++ P   PP PP     P      PPPP   +      P   G
Sbjct: 3   SLPPGNPPPPPPPPGFEPPSQPPPPPPPGYVKKRKNKTPAQSG 45


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,801,545
Number of Sequences: 5004
Number of extensions: 52580
Number of successful extensions: 177
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 166
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 436477420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)