Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP07_FL5_K03
         (854 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    28   1.5  
SPAC14C4.15c ||SPAPJ760.01c|dipeptidyl aminopeptidase |Schizosac...    27   2.6  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    27   3.4  
SPAC1006.07 |||translation initiation factor eIF4A|Schizosacchar...    26   7.8  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 12/29 (41%), Positives = 12/29 (41%)
 Frame = +3

Query: 651 PFXXXVSPPPPXXXXPXPPPPXXFXGGKG 737
           P    V PP P    P PPPP     G G
Sbjct: 746 PAPIPVPPPAPIMGGPPPPPPPPGVAGAG 774



 Score = 27.5 bits (58), Expect = 2.6
 Identities = 12/23 (52%), Positives = 12/23 (52%), Gaps = 2/23 (8%)
 Frame = -2

Query: 652 GGXXPPPPPXG--GXXXPXXXPP 590
           GG  PPPPP G  G   P   PP
Sbjct: 759 GGPPPPPPPPGVAGAGPPPPPPP 781


>SPAC14C4.15c ||SPAPJ760.01c|dipeptidyl aminopeptidase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 853

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 12/38 (31%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
 Frame = -3

Query: 135 IFEQEIWSNFRKSPGAPEGRCVPFLKFDRSR-SIAVLP 25
           ++E+EI  + +    +P+G C+ +L  D S+  + VLP
Sbjct: 277 VYEEEILQSSKAVWWSPDGNCLSYLSIDDSKVPVHVLP 314


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 10/20 (50%), Positives = 10/20 (50%)
 Frame = -2

Query: 649 GXXPPPPPXGGXXXPXXXPP 590
           G  PPPPP  G   P   PP
Sbjct: 7   GNPPPPPPPPGFEPPSQPPP 26



 Score = 26.2 bits (55), Expect = 5.9
 Identities = 10/22 (45%), Positives = 10/22 (45%)
 Frame = +3

Query: 648 PPFXXXVSPPPPXXXXPXPPPP 713
           PP      PPPP    P  PPP
Sbjct: 5   PPGNPPPPPPPPGFEPPSQPPP 26


>SPAC1006.07 |||translation initiation factor
           eIF4A|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 392

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 10/36 (27%), Positives = 18/36 (50%)
 Frame = +2

Query: 11  CADPLGRTAIERDRSNFKKGTHLPSGAPGDLRKLLQ 118
           C   +G T +  D +  + G H+  G PG +  ++Q
Sbjct: 118 CHACIGGTLVRDDMAALQAGVHVVVGTPGRVHDMIQ 153


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,416,115
Number of Sequences: 5004
Number of extensions: 40279
Number of successful extensions: 134
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 99
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 424464280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)