Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP07_FL5_J10
         (987 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    25   1.4  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     23   4.2  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   5.6  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       23   5.6  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   7.4  

>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 24.6 bits (51), Expect = 1.4
 Identities = 8/11 (72%), Positives = 8/11 (72%)
 Frame = +1

Query: 874 PXPPPPPXXGG 906
           P PPPPP  GG
Sbjct: 374 PLPPPPPIRGG 384


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 23.0 bits (47), Expect = 4.2
 Identities = 9/23 (39%), Positives = 11/23 (47%)
 Frame = +2

Query: 83  WPEXSFITRXXXCIFSKXYSLPL 151
           W     + R   CI  K YSLP+
Sbjct: 465 WNAPLNVQRAAKCIIGKDYSLPM 487


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.6 bits (46), Expect = 5.6
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = +1

Query: 868  GXPXPPPPP 894
            G P PPPPP
Sbjct: 1855 GSPEPPPPP 1863



 Score = 22.2 bits (45), Expect = 7.4
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = +3

Query: 867  GXPXXPPPPP 896
            G P  PPPPP
Sbjct: 1855 GSPEPPPPPP 1864


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 22.6 bits (46), Expect = 5.6
 Identities = 13/38 (34%), Positives = 15/38 (39%), Gaps = 4/38 (10%)
 Frame = +1

Query: 868 GXPXPPPPPXXG-GXXKKXXPPXP---XXXGGXPXXPP 969
           G P P P P       ++  PP P      GG P  PP
Sbjct: 19  GAPGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPP 56



 Score = 22.2 bits (45), Expect = 7.4
 Identities = 10/35 (28%), Positives = 10/35 (28%)
 Frame = +1

Query: 883 PPPPXXGGXXKKXXPPXPXXXGGXPXXPPXXEXGG 987
           P PP          PP P   G  P  P      G
Sbjct: 416 PMPPIPNMSNMSGMPPLPNMPGSMPTMPTMPSMAG 450


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 22.2 bits (45), Expect = 7.4
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +3

Query: 873  PXXPPPPPXGG 905
            P  PPPPP  G
Sbjct: 1355 PPPPPPPPSSG 1365



 Score = 22.2 bits (45), Expect = 7.4
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +1

Query: 874  PXPPPPPXXGG 906
            P PPPPP   G
Sbjct: 1355 PPPPPPPPSSG 1365



 Score = 21.8 bits (44), Expect = 9.8
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +1

Query: 676  PPPPPPXXXRG 708
            PPPPPP    G
Sbjct: 1355 PPPPPPPPSSG 1365


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 235,713
Number of Sequences: 438
Number of extensions: 5709
Number of successful extensions: 16
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 32653530
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)