Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP07_FL5_J04
         (871 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1610.04 |mug99||meiotically upregulated gene Mug99|Schizosac...    29   0.86 
SPAC8C9.04 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    28   2.0  
SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    27   2.6  
SPAC823.07 |||GPI-phospholipase A2 activity regulator |Schizosac...    27   2.6  
SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces...    27   3.5  
SPBC19C2.01 |cdc28|prp8|ATP-dependent RNA helicase Cdc28 |Schizo...    27   3.5  
SPCC736.11 |ago1|csp9|argonaute|Schizosaccharomyces pombe|chr 3|...    27   3.5  
SPBC16A3.11 |eso1||sister chromatid cohesion protein Eso1|Schizo...    27   3.5  
SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyc...    27   4.6  
SPBC23G7.14 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    26   6.1  
SPAC17G6.13 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   8.0  
SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2 |Schizosa...    26   8.0  

>SPAC1610.04 |mug99||meiotically upregulated gene
           Mug99|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 526

 Score = 29.1 bits (62), Expect = 0.86
 Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
 Frame = -1

Query: 415 WSQAGAEPHKAALPPTQDLQCLDRFRS-LCSSF 320
           W Q+G +  +  + PT DL+   RF + LC SF
Sbjct: 240 WEQSGFQQLRTNMTPTSDLEICKRFLNYLCCSF 272


>SPAC8C9.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 647

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 14/36 (38%), Positives = 22/36 (61%)
 Frame = +3

Query: 201 ATPADNHASSRVHAGRPTRGSGGPSTPRASLATTFG 308
           +TPA +  SS+ HA RP++ +  PS+P  + A   G
Sbjct: 499 STPAKSAQSSK-HARRPSKQASAPSSPGTTSAAVPG 533


>SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 536

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 14/30 (46%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
 Frame = +3

Query: 204 TPA-DNHASSRVHAGRPTRGSGGPSTPRAS 290
           TPA  N+ + R  A RP+ G+GG + P AS
Sbjct: 318 TPAAGNNTNGRPVAPRPSAGAGGANPPAAS 347


>SPAC823.07 |||GPI-phospholipase A2 activity regulator
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 331

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 11/42 (26%), Positives = 18/42 (42%)
 Frame = -2

Query: 240 HGPDCSHDYLQASLVVFVWQCWGGSGLRCRLSEAHHFRSYVL 115
           HG       L   L +F W C    G  C ++  ++F ++ L
Sbjct: 46  HGNPSDTSKLPLDLKLFRWDCGSNCGYECEITAENYFAAHNL 87


>SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 565

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 16/53 (30%), Positives = 24/53 (45%)
 Frame = +3

Query: 144 RSDDSAAHSRPNTAKRRRRATPADNHASSRVHAGRPTRGSGGPSTPRASLATT 302
           RSD+   H+R +T    RR   A   A++   +     G+  PST  A +  T
Sbjct: 67  RSDELTRHARIHTNANSRRNAAAAAAANNSARSSNSPAGNLEPSTNNAGVHMT 119


>SPBC19C2.01 |cdc28|prp8|ATP-dependent RNA helicase Cdc28
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1055

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 15/36 (41%), Positives = 21/36 (58%)
 Frame = +1

Query: 31  RSANEETLRLQALSERQEAEILQLRKEVEDVRAEMV 138
           +S++ ET RL  L ER+E E    RK++E    E V
Sbjct: 169 KSSDPETERLNDLREREEFEERLRRKDLEAATNEFV 204


>SPCC736.11 |ago1|csp9|argonaute|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 834

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 3/48 (6%)
 Frame = -2

Query: 684 SSKSLLXTFLLRLERG---RVSVSLXFRVGRRCWLLFPSRPCSSTRNG 550
           SSKS   +F +R   G   ++SV+  F       L +P+ PC   +NG
Sbjct: 267 SSKSASDSFFVRRLNGEEQKISVAEYFLENHNVRLQYPNLPCILVKNG 314


>SPBC16A3.11 |eso1||sister chromatid cohesion protein
           Eso1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 872

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 16/57 (28%), Positives = 23/57 (40%), Gaps = 1/57 (1%)
 Frame = -1

Query: 505 AARVELVARVELTASSSCYCPSVSWASLSCWSQAGAEPHKAALP-PTQDLQCLDRFR 338
           AAR   ++R E    +   CP +  A +  W    +E      P P     CLD +R
Sbjct: 68  AARAANISRHETVTEAKKKCPELCTAHVKTWKAGESEAKYHENPNPNYYKTCLDPYR 124


>SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1190

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 17/50 (34%), Positives = 26/50 (52%)
 Frame = +3

Query: 90  DPAAQEGSRGRKSGNGAPRSDDSAAHSRPNTAKRRRRATPADNHASSRVH 239
           + A++ G    ++   +P SD S     PN AKRRRR+      A+ R+H
Sbjct: 3   EEASEHGGSADETQELSPVSDSS--DEMPNNAKRRRRS--QSMIANKRIH 48


>SPBC23G7.14 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 131

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 11/45 (24%), Positives = 23/45 (51%)
 Frame = +1

Query: 1   YWEATEDLASRSANEETLRLQALSERQEAEILQLRKEVEDVRAEM 135
           +W   E +  R    E   LQ  ++ +  ++LQ RK+++  R+ +
Sbjct: 13  FWTLQESIPLRRRIREIRELQERNKNKYEQLLQARKDLDRFRSNL 57


>SPAC17G6.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 433

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 12/46 (26%), Positives = 27/46 (58%)
 Frame = +1

Query: 4   WEATEDLASRSANEETLRLQALSERQEAEILQLRKEVEDVRAEMVR 141
           ++  +D + + A EE  +   + +RQE ++   +K +ED R E+++
Sbjct: 15  YQNVQDHSLQMALEELNQQIEVIQRQEEQLALRKKAIEDARQEVLQ 60


>SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1628

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 14/54 (25%), Positives = 26/54 (48%)
 Frame = +2

Query: 536  RSVGRPLRVEEHGREGKRSQHRRPTRKXNETETLPRSSLRRKVXRRDFELRARR 697
            RS G     +    +G+RS H    ++   +++   S+LR +  R +   RAR+
Sbjct: 1543 RSNGSNRGNDSRDADGRRSTHYASNKRPRSSDSQSPSNLREEDERENSRRRARQ 1596


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,804,623
Number of Sequences: 5004
Number of extensions: 47845
Number of successful extensions: 166
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 166
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 434475230
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)