Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP07_FL5_J04
         (871 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    27   0.23 
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              25   0.69 
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    23   3.7  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    22   6.4  

>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 27.1 bits (57), Expect = 0.23
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = -1

Query: 388 KAALPPTQDLQCLDRFRSLCSSFL 317
           +A+LPP   L+ +D F S+C+ F+
Sbjct: 295 QASLPPVSYLKAVDAFMSVCTVFV 318


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 25.4 bits (53), Expect = 0.69
 Identities = 15/42 (35%), Positives = 18/42 (42%), Gaps = 2/42 (4%)
 Frame = +2

Query: 494  HPSRAHS--LRPPLPLRSVGRPLRVEEHGREGKRSQHRRPTR 613
            HP   HS  + PP     VG P     H R G +S  R+  R
Sbjct: 1750 HPGNGHSGTMGPP-----VGHPTNASAHSRSGSQSMPRQNGR 1786


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 22/66 (33%), Positives = 28/66 (42%), Gaps = 1/66 (1%)
 Frame = -1

Query: 520 PEGMRAARVELVARVELTASSSCYCPSVSWASLSCWSQAGAEPHKAALPPT-QDLQCLDR 344
           P G  A+   L+A       +   CP    A+    S    E H+A+L  T Q  QC  R
Sbjct: 516 PSGHHASSAPLLA----ATLAGGLCPHRRRANSGSTSSGDDELHRASLSKTPQPPQC-PR 570

Query: 343 FRSLCS 326
           FR L S
Sbjct: 571 FRKLDS 576


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 22.2 bits (45), Expect = 6.4
 Identities = 15/69 (21%), Positives = 29/69 (42%)
 Frame = +3

Query: 63  GTQRETGGGDPAAQEGSRGRKSGNGAPRSDDSAAHSRPNTAKRRRRATPADNHASSRVHA 242
           G +R+ G  D +  +G+      +      +S+    P  A     +T +   A     A
Sbjct: 479 GGERQNGRKD-SGYDGAASTAVIHEPVVETNSSPSPNPRIASAPSSSTSSSPPAKGAAAA 537

Query: 243 GRPTRGSGG 269
           G+P++ +GG
Sbjct: 538 GQPSKRNGG 546


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 197,687
Number of Sequences: 438
Number of extensions: 3863
Number of successful extensions: 14
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28159464
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)