Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP07_FL5_J02
         (896 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    35   0.018
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    27   2.7  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 34.7 bits (76), Expect = 0.018
 Identities = 19/52 (36%), Positives = 19/52 (36%)
 Frame = -1

Query: 626 PPPPXXGGGGGXXXXPPPPXXXXXXPPPPXFFFXXPPPXGGXGXGGGXXXXP 471
           P PP     GG    PPPP      PPPP      PPP      GG     P
Sbjct: 750 PVPPPAPIMGGPPPPPPPPGVAGAGPPPP------PPPPPAVSAGGSRYYAP 795



 Score = 28.3 bits (60), Expect = 1.6
 Identities = 18/61 (29%), Positives = 18/61 (29%)
 Frame = +1

Query: 445 PPXXXXXXXGXXXXPPPXPXPPXGGGXKKKXXGGGGXXXXXXGGGGXXXXPPPPPXXGGG 624
           PP            P P P P  GG        G         G G    PPPPP    G
Sbjct: 736 PPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPG-------VAGAGPPPPPPPPPAVSAG 788

Query: 625 G 627
           G
Sbjct: 789 G 789



 Score = 27.1 bits (57), Expect = 3.6
 Identities = 11/33 (33%), Positives = 12/33 (36%)
 Frame = +1

Query: 433 GGXXPPXXXXXXXGXXXXPPPXPXPPXGGGXKK 531
           GG  PP       G    PPP P P    G  +
Sbjct: 759 GGPPPPPPPPGVAGAGPPPPPPPPPAVSAGGSR 791


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 11/29 (37%), Positives = 11/29 (37%)
 Frame = -1

Query: 626 PPPPXXGGGGGXXXXPPPPXXXXXXPPPP 540
           PPPP           P PP      PPPP
Sbjct: 337 PPPPPPPRSNAAGSIPLPPQGRSAPPPPP 365



 Score = 26.2 bits (55), Expect = 6.3
 Identities = 10/28 (35%), Positives = 10/28 (35%)
 Frame = -2

Query: 625 PPPPXXGGGGGXXXXPPPXXXXXXXPPP 542
           PPPP      G    PP        PPP
Sbjct: 339 PPPPPRSNAAGSIPLPPQGRSAPPPPPP 366


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,724,738
Number of Sequences: 5004
Number of extensions: 26292
Number of successful extensions: 107
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 56
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 452494940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)