Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP07_FL5_I24
         (870 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|c...    29   0.86 
SPAC869.04 |||formamidase-like protein|Schizosaccharomyces pombe...    29   0.86 
SPAC1782.09c |clp1|flp1|Cdc14-related protein phosphatase Clp1/F...    27   3.5  
SPBC800.13 |||histone H4 variant|Schizosaccharomyces pombe|chr 2...    26   8.0  
SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr...    26   8.0  
SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces pom...    26   8.0  
SPAC4G9.13c |vps26|pep8|retromer complex subunit Vps26|Schizosac...    26   8.0  

>SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1142

 Score = 29.1 bits (62), Expect = 0.86
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +3

Query: 477 SGCGRCRVWSMFVRYVRFSE 536
           +GCG+  VW  +VR+V F E
Sbjct: 108 NGCGKSYVWPSYVRFVDFDE 127


>SPAC869.04 |||formamidase-like protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 410

 Score = 29.1 bits (62), Expect = 0.86
 Identities = 13/25 (52%), Positives = 17/25 (68%)
 Frame = -3

Query: 661 ARKIRGRPENAGPDPVRNVRRFSRV 587
           AR I GRPEN G   ++N+ R S+V
Sbjct: 214 ARTIPGRPENGGNCDIKNLSRGSKV 238


>SPAC1782.09c |clp1|flp1|Cdc14-related protein phosphatase
           Clp1/Flp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 537

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 16/43 (37%), Positives = 25/43 (58%)
 Frame = -2

Query: 347 ADMGTNRRDISTYIPHLNFQGPQRVSGHRRKCGALRVPNHISL 219
           A  GT++ +IST +P      P++VSGH     A R+P+  S+
Sbjct: 371 ATNGTSQSNISTPLPEPTPGQPRKVSGHNPP-SARRLPSASSV 412


>SPBC800.13 |||histone H4 variant|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 479

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 14/51 (27%), Positives = 22/51 (43%)
 Frame = -3

Query: 745 VPVLS*PLNXXRTESCRSRTKRNRHDLTARKIRGRPENAGPDPVRNVRRFS 593
           VP+   PL+   T+     T   RH  T  + +    N GPD + +   +S
Sbjct: 211 VPIFRIPLSDYETDDMDDGTPLQRHVATLNQYQSPIFNLGPDILEDEPSYS 261


>SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 121

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 16/47 (34%), Positives = 20/47 (42%), Gaps = 1/47 (2%)
 Frame = -1

Query: 255 MRCSSRSEPYLPSI-GFHGTRTLRQKRKLFPDLSAASSGHFGLPRRT 118
           MR +   E Y+  + G H   T  Q   LF D     + H  L RRT
Sbjct: 1   MRPAKSVEGYIIIVTGVHPEATEEQVEDLFADFGPVKNLHLNLDRRT 47


>SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1375

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 17/54 (31%), Positives = 27/54 (50%)
 Frame = -2

Query: 260  RKCGALRVPNHISLL*DSMELERSGRKENSSRTSRRRLQATLGYPVEHSFLKXE 99
            +K   + +P HI LL +  E + + +++ +   SRRR    L    EH  LK E
Sbjct: 1037 QKISEMNIPGHIHLLRELEEEKSNTQRKIAHFESRRRYLTNL---YEHIVLKAE 1087


>SPAC4G9.13c |vps26|pep8|retromer complex subunit
           Vps26|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 298

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +3

Query: 699 HDSVRXXFNGQLKTGTDKGN 758
           HD V+  F GQ++   DKGN
Sbjct: 61  HDGVKIEFIGQIENTYDKGN 80


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,549,456
Number of Sequences: 5004
Number of extensions: 74530
Number of successful extensions: 177
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 171
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 177
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 434475230
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)