Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP07_FL5_I19
         (1247 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    24   3.2  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   5.5  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       23   7.3  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 23.8 bits (49), Expect = 3.2
 Identities = 8/12 (66%), Positives = 8/12 (66%)
 Frame = +2

Query: 236  RGXXPPPPPPXP 271
            R   PPPPPP P
Sbjct: 1351 RQQQPPPPPPPP 1362



 Score = 23.8 bits (49), Expect = 3.2
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = -1

Query: 461  PPPPPPP 441
            PPPPPPP
Sbjct: 1355 PPPPPPP 1361



 Score = 23.8 bits (49), Expect = 3.2
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = -1

Query: 461  PPPPPPP 441
            PPPPPPP
Sbjct: 1356 PPPPPPP 1362


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.0 bits (47), Expect = 5.5
 Identities = 8/20 (40%), Positives = 9/20 (45%)
 Frame = -1

Query: 482  PXAXGXXPPPPPPPGXXXKN 423
            P +    PPPPPP      N
Sbjct: 1852 PVSGSPEPPPPPPRNHDQNN 1871



 Score = 22.2 bits (45), Expect = 9.7
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = +2

Query: 248  PPPPPPXPR 274
            P PPPP PR
Sbjct: 1857 PEPPPPPPR 1865


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 22.6 bits (46), Expect = 7.3
 Identities = 10/26 (38%), Positives = 10/26 (38%)
 Frame = +2

Query: 1166 PPXPXXXXXVPPSXGXPXGRXPXPPP 1243
            P  P       PS G P G  P  PP
Sbjct: 31   PQAPQRGSPPNPSQGPPPGGPPGAPP 56


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 198,854
Number of Sequences: 438
Number of extensions: 4593
Number of successful extensions: 18
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 60
effective length of database: 120,063
effective search space used: 42622365
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)