Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP07_FL5_I08
         (840 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC29A4.08c |prp19|cwf8|ubiquitin-protein ligase E4 |Schizosacc...   100   3e-22
SPAC26A3.12c |dhp1||5'-3' exoribonuclease Dhp1 |Schizosaccharomy...    27   2.5  
SPAC21E11.05c |cyp8||cyclophilin family peptidyl-prolyl cis-tran...    27   2.5  
SPAC105.01c |||potassium ion/proton antiporter|Schizosaccharomyc...    27   4.4  

>SPAC29A4.08c |prp19|cwf8|ubiquitin-protein ligase E4
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 488

 Score =  100 bits (239), Expect = 3e-22
 Identities = 56/128 (43%), Positives = 70/128 (54%)
 Frame = +3

Query: 144 PKYQWYHLTSGAVFERRIIEKYIIENGVDPINGKELRVEDLXXXXXXXXXXXXXXSATSI 323
           PK       SG V+E+R+IE+ I E   DP+  +E  +EDL              SATS+
Sbjct: 10  PKEPVISRVSGNVYEKRLIEQVIRETSKDPVTQQECTLEDLVPVKVPDFVRPRPPSATSL 69

Query: 324 PATLKSMQDEWDALMLHAFTQRQQLQTARQELSHALYQHDAECRVIARLTKEVTAAREAL 503
           PA L   Q+EWD++ L  F  R+ L   +QELS ALY  DA  RVI+RLTKE   AREAL
Sbjct: 70  PALLSLFQEEWDSVALEQFELRRNLTETKQELSTALYSLDAALRVISRLTKERDEAREAL 129

Query: 504 ATLKPQAG 527
           A      G
Sbjct: 130 AKFSDNIG 137


>SPAC26A3.12c |dhp1||5'-3' exoribonuclease Dhp1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 991

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = +3

Query: 636 LTQERKRRGRTLPEGLLAPEQIRAFLTLASHPGL 737
           + Q+R RR R+  E  L  E+++AF+  A   G+
Sbjct: 112 MNQQRSRRFRSSREAALKEEELQAFIEEAKQQGI 145


>SPAC21E11.05c |cyp8||cyclophilin family peptidyl-prolyl cis-trans
           isomerase Cyp8|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 516

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 10/29 (34%), Positives = 20/29 (68%)
 Frame = +3

Query: 180 VFERRIIEKYIIENGVDPINGKELRVEDL 266
           +F+ R I  ++ ++G +PING++  + DL
Sbjct: 67  IFDFRFIVPWLRKHGTNPINGQKASMSDL 95


>SPAC105.01c |||potassium ion/proton antiporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 898

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 20/65 (30%), Positives = 34/65 (52%)
 Frame = -3

Query: 277 LISIRSSTLNSLPLIGSTPFSIMYFSMILLSNTAPDVR*YHWYFGNFI*YRTIERHFAYD 98
           L+++++ +L   P   S  F  +  SM+L+S    D+   H  FG F+   TI  H   D
Sbjct: 247 LLAVKTRSLKDKP---SESFICIVLSMVLVSAFFTDIIGIHPIFGGFL-VGTIIPH-END 301

Query: 97  ITLKV 83
           +T+K+
Sbjct: 302 LTVKI 306


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,593,601
Number of Sequences: 5004
Number of extensions: 73595
Number of successful extensions: 215
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 209
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 215
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 414453330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)