Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP07_FL5_I05
         (907 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    24   1.7  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    24   1.7  
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      24   2.2  
AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier...    23   2.9  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    23   2.9  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    23   3.8  

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 24.2 bits (50), Expect = 1.7
 Identities = 13/33 (39%), Positives = 21/33 (63%), Gaps = 4/33 (12%)
 Frame = +1

Query: 715 VVAYTPLRXSVQP-PAVG---SSAGGPTTXVSW 801
           ++ Y+ +  ++QP PAV    S+AG PT  V+W
Sbjct: 423 MLLYSFIEQTLQPGPAVSLKCSAAGNPTPQVTW 455


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 24.2 bits (50), Expect = 1.7
 Identities = 13/33 (39%), Positives = 21/33 (63%), Gaps = 4/33 (12%)
 Frame = +1

Query: 715 VVAYTPLRXSVQP-PAVG---SSAGGPTTXVSW 801
           ++ Y+ +  ++QP PAV    S+AG PT  V+W
Sbjct: 423 MLLYSFIEQTLQPGPAVSLKCSAAGNPTPQVTW 455


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 23.8 bits (49), Expect = 2.2
 Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
 Frame = -2

Query: 99  MDDSSENEHKG--IFVNNHFIHNHS*LIAGQQKP 4
           MD SS  EH+   I+ ++H +H+H   +  QQ P
Sbjct: 56  MDLSSPPEHRDLPIYQSHHHLHHHQ--VLYQQSP 87


>AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier
           protein JHBP-1 protein.
          Length = 253

 Score = 23.4 bits (48), Expect = 2.9
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +1

Query: 556 GLTKSIGVSNFNIQQLEXLKSXGGVTPSV 642
           GLTK++ + N+NI   + + S     P V
Sbjct: 97  GLTKNLEIKNYNIDWDKCILSSESYNPQV 125


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 23.4 bits (48), Expect = 2.9
 Identities = 18/63 (28%), Positives = 27/63 (42%)
 Frame = -1

Query: 568 TWSDPGSRHRS*LATSPRNLFGKLRRFRAERSASELNIDSRNPNPNSSMIS*GPAKPPPS 389
           T S     HR+ L+ +P+    +  RFR   S S+  I+S    P+    S   + P   
Sbjct: 547 TSSGDDELHRASLSKTPQP--PQCPRFRKLDSPSDSGIESGTEKPDKPASSSASSAPTSV 604

Query: 388 CGS 380
           C S
Sbjct: 605 CSS 607


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 23.0 bits (47), Expect = 3.8
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = -1

Query: 736 EGGCTPPQXSLEPCSSPV 683
           EGG T P  ++  C SP+
Sbjct: 578 EGGKTSPNSAVRKCMSPI 595


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 237,680
Number of Sequences: 438
Number of extensions: 5110
Number of successful extensions: 23
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29388177
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)