Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP07_FL5_I02
         (799 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein L2|Schizo...   101   2e-22
SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein L2|Schizo...   100   2e-22
SPAC1D4.08 |pis1||CDP-diacylglycerol--inositol 3-phosphatidyltra...    26   7.2  
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    26   7.2  

>SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein
           L2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score =  101 bits (241), Expect = 2e-22
 Identities = 49/83 (59%), Positives = 63/83 (75%)
 Frame = +1

Query: 100 LSVARPLXVGVFREE*DGAGXQPSPPRFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEA 279
           ++ ARP  V ++ ++   +    + P FVFKAPIRPDLV  VH +++KN RQPY VS++A
Sbjct: 1   MAAARPT-VSIYNKDGSVSSETLALP-FVFKAPIRPDLVRSVHTAVAKNKRQPYAVSEKA 58

Query: 280 GHQTSAESWGTGRAVARIPRVRG 348
           GHQTSAESWGTGRA+ARIPRV G
Sbjct: 59  GHQTSAESWGTGRALARIPRVGG 81


>SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein
           L2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score =  100 bits (240), Expect = 2e-22
 Identities = 49/83 (59%), Positives = 63/83 (75%)
 Frame = +1

Query: 100 LSVARPLXVGVFREE*DGAGXQPSPPRFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEA 279
           ++ ARP  V ++ ++   +    + P FVFKAPIRPDLV  VH +++KN RQPY VS++A
Sbjct: 1   MAAARPT-VSIYSKDGSVSSETIALP-FVFKAPIRPDLVRSVHTAVAKNKRQPYAVSEKA 58

Query: 280 GHQTSAESWGTGRAVARIPRVRG 348
           GHQTSAESWGTGRA+ARIPRV G
Sbjct: 59  GHQTSAESWGTGRALARIPRVGG 81


>SPAC1D4.08 |pis1||CDP-diacylglycerol--inositol
           3-phosphatidyltransferase Pis1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 251

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 14/28 (50%), Positives = 20/28 (71%), Gaps = 2/28 (7%)
 Frame = -1

Query: 118 KVG-LPIDSFRYFSEAIPLKY-TLIAVI 41
           K+G LP+ SF Y +  +PL Y TL+AV+
Sbjct: 186 KLGYLPVPSFIYSTGELPLSYPTLLAVL 213


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 15/51 (29%), Positives = 21/51 (41%)
 Frame = -2

Query: 429 GGGEKXVPPXXXCLPEGTPDRTL*VPPPTDTRNSGDSTSSTP*FSTGLVTS 277
           GG      P    +P  +   T    PPT T ++  ++S  P  ST   TS
Sbjct: 182 GGSSSLSTPITPTVPPTSTSSTSIPIPPTSTSSTDTNSSPLPTTSTSCTTS 232



 Score = 25.8 bits (54), Expect = 7.2
 Identities = 15/51 (29%), Positives = 21/51 (41%)
 Frame = -2

Query: 429 GGGEKXVPPXXXCLPEGTPDRTL*VPPPTDTRNSGDSTSSTP*FSTGLVTS 277
           GG      P    +P  +   T    PPT T ++  ++S  P  ST   TS
Sbjct: 238 GGSSSLSTPITPTVPPTSTSSTSIPIPPTSTSSTDTNSSPLPTTSTSCTTS 288


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,201,750
Number of Sequences: 5004
Number of extensions: 38003
Number of successful extensions: 81
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 78
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 81
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 389395636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)