Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP07_FL5_I02
         (799 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0578 + 4295386-4296489,4297394-4297507                           89   4e-18
03_06_0298 - 32925441-32925998,32926371-32926730,32927161-329272...    87   2e-17
04_04_0053 + 22389227-22389613,22390528-22390981,22391618-223916...    31   1.4  
08_01_0057 - 383603-384256                                             30   1.9  
07_01_0354 + 2578676-2578753,2578871-2578951,2579070-2579312           28   7.5  
04_04_0065 + 22456225-22456744,22456813-22457768                       28   7.5  
03_02_0659 - 10241375-10241538,10241806-10241860                       28   9.9  

>07_01_0578 + 4295386-4296489,4297394-4297507
          Length = 405

 Score = 89.0 bits (211), Expect = 4e-18
 Identities = 40/55 (72%), Positives = 46/55 (83%)
 Frame = +1

Query: 184 VFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTSAESWGTGRAVARIPRVRG 348
           VF+AP+RPD+V  VH  +S N RQPY VS+ AGHQTSAESWGTGRAV+RIPRV G
Sbjct: 31  VFRAPLRPDVVRFVHRLLSCNKRQPYAVSRRAGHQTSAESWGTGRAVSRIPRVPG 85


>03_06_0298 -
           32925441-32925998,32926371-32926730,32927161-32927230,
           32927642-32927797,32929181-32929242,32929339-32929352,
           32930421-32930520,32931474-32932574
          Length = 806

 Score = 86.6 bits (205), Expect = 2e-17
 Identities = 44/67 (65%), Positives = 50/67 (74%)
 Frame = +1

Query: 148 DGAGXQPSPPRFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTSAESWGTGRAVA 327
           D AG Q   P+ V +APIRPD+V   H  +S N RQPY VS+ AGHQTSAESWGTGRAV+
Sbjct: 21  DSAGIQM--PQ-VLRAPIRPDVVTFTHKLLSCNRRQPYAVSRRAGHQTSAESWGTGRAVS 77

Query: 328 RIPRVRG 348
           RIPRV G
Sbjct: 78  RIPRVPG 84


>04_04_0053 +
           22389227-22389613,22390528-22390981,22391618-22391673,
           22391757-22391887,22391976-22392072,22393329-22393484
          Length = 426

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 17/39 (43%), Positives = 22/39 (56%)
 Frame = -2

Query: 369 RTL*VPPPTDTRNSGDSTSSTP*FSTGLVTSLLAHAVGL 253
           R + + P T  R+SGDS SSTP  S G  T+   +  GL
Sbjct: 267 RPIRIGPATPRRSSGDSGSSTPGHSDGDSTNRTVYVGGL 305


>08_01_0057 - 383603-384256
          Length = 217

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = +2

Query: 368 RSGVPSGKHXFXGGTXFSPPPKTPXGXLXP 457
           RSG PS KH   G    +PPP +P   + P
Sbjct: 17  RSGPPSSKHGHGGHAKRAPPPASPVVPVAP 46


>07_01_0354 + 2578676-2578753,2578871-2578951,2579070-2579312
          Length = 133

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 14/47 (29%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
 Frame = -2

Query: 342 DTRNSGDSTSSTP*FSTG--LVTSLLAHAVGLPRVLGHRNVNIIDQV 208
           + R+SG  T     F+    L    + H +G+  VLG +N+ ++DQ+
Sbjct: 85  EARDSGLQTGDPAGFTLADTLACGAVGHIMGVGVVLGLKNIGVLDQI 131


>04_04_0065 + 22456225-22456744,22456813-22457768
          Length = 491

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 13/24 (54%), Positives = 15/24 (62%)
 Frame = +2

Query: 281 VTKPVLNHGVLDVLSPEFRVSVGG 352
           + +P L HG   VL PEF  SVGG
Sbjct: 336 IVRPDLIHGDAAVLPPEFMESVGG 359


>03_02_0659 - 10241375-10241538,10241806-10241860
          Length = 72

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = +3

Query: 321 CRPNSACPWVVVLIRSGQGCL 383
           C   S C W++ LI  G GCL
Sbjct: 19  CGDGSGCGWLMDLISDGSGCL 39


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,645,199
Number of Sequences: 37544
Number of extensions: 400309
Number of successful extensions: 789
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 762
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 783
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2162420256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)