Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP07_FL5_H11
         (862 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc fi...    25   0.90 
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   3.6  
AB208107-1|BAE72139.1|   71|Apis mellifera Broad complex zinc fi...    22   6.3  
AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phospha...    22   8.4  

>AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc
           finger domain-Z3 isoform protein.
          Length = 92

 Score = 25.0 bits (52), Expect = 0.90
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = +3

Query: 270 YSKKKHYADQNTSSGTPQERECSIRKSCNNVSVTSMEDLSH 392
           YS K+H+ D++  S T    E   R+     S+T+ + L H
Sbjct: 19  YSLKRHFQDKHEQSDTLYVCEFCNRRYRTKNSLTTHKSLQH 59


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 23.0 bits (47), Expect = 3.6
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +3

Query: 168  LLGVQQDNVYPQAYIRSEIRTLLSLA 245
            L+ VQ +N YP+  +  E+R  L  A
Sbjct: 1160 LIIVQAENAYPEVELDRELRPYLRTA 1185


>AB208107-1|BAE72139.1|   71|Apis mellifera Broad complex zinc
           finger domain-Z2 isoform protein.
          Length = 71

 Score = 22.2 bits (45), Expect = 6.3
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +3

Query: 261 CSKYSKKKHYADQNTSSGTPQERECSI 341
           CSK S K+H AD++      +E  C I
Sbjct: 16  CSKASLKRHVADKHAE--RQEEYRCVI 40


>AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phosphate
           dehydrogenase protein.
          Length = 363

 Score = 21.8 bits (44), Expect = 8.4
 Identities = 10/35 (28%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
 Frame = -3

Query: 746 VCLLAGARSHRTCS-VIGIESSRF*NFSDNSQSHV 645
           +C++       T + +IGI ++ F NF D    +V
Sbjct: 7   ICIVGSGNWGSTIAKIIGINAANFSNFEDRVTMYV 41


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 223,284
Number of Sequences: 438
Number of extensions: 4281
Number of successful extensions: 37
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 37
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27795333
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)