Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP07_FL5_H09
         (865 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0114 - 886404-887111                                             31   1.6  
04_03_0387 - 15251816-15251905,15251999-15252069,15252098-152523...    30   2.7  

>11_01_0114 - 886404-887111
          Length = 235

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 22/82 (26%), Positives = 38/82 (46%), Gaps = 4/82 (4%)
 Frame = +3

Query: 405 TPSSSTNGTETLVPEDNLYALMPPFETFLNVD----KTARLRHFFDNVKTGELIIGAVIN 572
           T +++ NG+ +++P   + A  PPF T  + D    +  R R          L++  V+ 
Sbjct: 5   TAAAAGNGSGSILPTHTIAATAPPFRTHKDADLESRRRRRRRRCLCCCLLVTLVVLLVLA 64

Query: 573 RTASGMMLKVLCTAGPTSRYVA 638
            T   + L VL    PT+R V+
Sbjct: 65  ITLLVLFLTVLRVRDPTTRLVS 86


>04_03_0387 -
           15251816-15251905,15251999-15252069,15252098-15252323,
           15252344-15252496,15252570-15252656,15252745-15252948,
           15253038-15253159,15253354-15253507,15254329-15254434,
           15254507-15254617,15256468-15256622
          Length = 492

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 15/31 (48%), Positives = 18/31 (58%)
 Frame = +3

Query: 399 EGTPSSSTNGTETLVPEDNLYALMPPFETFL 491
           +GT SS+ N      PEDNL A +PP  T L
Sbjct: 428 QGTSSSNVNAFIKKYPEDNLLARLPPSLTRL 458


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,709,190
Number of Sequences: 37544
Number of extensions: 405444
Number of successful extensions: 857
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 839
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 857
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2420970504
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)