Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP07_FL5_H08
(722 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein L3|Sch... 30 0.29
SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3 |Schiz... 30 0.29
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 29 0.67
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 27 2.7
SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces... 27 2.7
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S... 27 3.6
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 27 3.6
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2... 27 3.6
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1... 27 3.6
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 24 3.7
>SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein
L3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 388
Score = 30.3 bits (65), Expect = 0.29
Identities = 17/46 (36%), Positives = 20/46 (43%)
Frame = +2
Query: 44 KILXPRXGFLGFXPXKRAPXXPXEGKGVXQKNPPNPGFLXXFXGXK 181
K PR G LGF P KRA + K + + P L F G K
Sbjct: 5 KFEQPRHGSLGFLPRKRASRQRGKVKAFPKDDASKPVHLTAFLGYK 50
>SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 388
Score = 30.3 bits (65), Expect = 0.29
Identities = 17/46 (36%), Positives = 20/46 (43%)
Frame = +2
Query: 44 KILXPRXGFLGFXPXKRAPXXPXEGKGVXQKNPPNPGFLXXFXGXK 181
K PR G LGF P KRA + K + + P L F G K
Sbjct: 5 KFEQPRHGSLGFLPRKRASRQRGKVKAFPKDDASKPVHLTAFLGYK 50
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 29.1 bits (62), Expect = 0.67
Identities = 9/9 (100%), Positives = 9/9 (100%)
Frame = +1
Query: 529 GPPPPPPPP 555
GPPPPPPPP
Sbjct: 760 GPPPPPPPP 768
Score = 29.1 bits (62), Expect = 0.67
Identities = 9/9 (100%), Positives = 9/9 (100%)
Frame = +1
Query: 529 GPPPPPPPP 555
GPPPPPPPP
Sbjct: 774 GPPPPPPPP 782
Score = 26.6 bits (56), Expect = 3.6
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = +2
Query: 533 PPPPPPPP 556
PPPPPPPP
Sbjct: 776 PPPPPPPP 783
Score = 25.4 bits (53), Expect = 8.3
Identities = 8/9 (88%), Positives = 8/9 (88%)
Frame = +1
Query: 529 GPPPPPPPP 555
G PPPPPPP
Sbjct: 759 GGPPPPPPP 767
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 27.1 bits (57), Expect = 2.7
Identities = 8/10 (80%), Positives = 9/10 (90%)
Frame = +3
Query: 528 WXPPPPPPPP 557
+ PPPPPPPP
Sbjct: 187 YNPPPPPPPP 196
Score = 26.6 bits (56), Expect = 3.6
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = +1
Query: 532 PPPPPPPP 555
PPPPPPPP
Sbjct: 190 PPPPPPPP 197
>SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 713
Score = 27.1 bits (57), Expect = 2.7
Identities = 8/10 (80%), Positives = 9/10 (90%)
Frame = +3
Query: 528 WXPPPPPPPP 557
+ PPPPPPPP
Sbjct: 368 YSPPPPPPPP 377
>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
Cap1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 551
Score = 26.6 bits (56), Expect = 3.6
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = +2
Query: 533 PPPPPPPP 556
PPPPPPPP
Sbjct: 306 PPPPPPPP 313
Score = 26.6 bits (56), Expect = 3.6
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = +1
Query: 532 PPPPPPPP 555
PPPPPPPP
Sbjct: 307 PPPPPPPP 314
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 26.6 bits (56), Expect = 3.6
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = +1
Query: 532 PPPPPPPP 555
PPPPPPPP
Sbjct: 9 PPPPPPPP 16
Score = 25.4 bits (53), Expect = 8.3
Identities = 8/9 (88%), Positives = 8/9 (88%)
Frame = +1
Query: 529 GPPPPPPPP 555
G PPPPPPP
Sbjct: 7 GNPPPPPPP 15
>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1217
Score = 26.6 bits (56), Expect = 3.6
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = +1
Query: 532 PPPPPPPP 555
PPPPPPPP
Sbjct: 1095 PPPPPPPP 1102
>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1841
Score = 26.6 bits (56), Expect = 3.6
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = +3
Query: 534 PPPPPPPP 557
PPPPPPPP
Sbjct: 945 PPPPPPPP 952
Score = 26.6 bits (56), Expect = 3.6
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = +2
Query: 533 PPPPPPPP 556
PPPPPPPP
Sbjct: 946 PPPPPPPP 953
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 23.8 bits (49), Expect(2) = 3.7
Identities = 7/7 (100%), Positives = 7/7 (100%)
Frame = +2
Query: 533 PPPPPPP 553
PPPPPPP
Sbjct: 337 PPPPPPP 343
Score = 21.0 bits (42), Expect(2) = 3.7
Identities = 6/6 (100%), Positives = 6/6 (100%)
Frame = +2
Query: 539 PPPPPP 556
PPPPPP
Sbjct: 361 PPPPPP 366
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,393,428
Number of Sequences: 5004
Number of extensions: 14999
Number of successful extensions: 301
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 60
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 339215786
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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