Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP07_FL5_H07
         (876 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces p...    28   2.0  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    27   2.7  
SPAC1142.02c ||SPAC17G6.19c|TPR repeat protein|Schizosaccharomyc...    27   4.6  
SPAC2F3.13c |||queuine tRNA-ribosyltransferase |Schizosaccharomy...    27   4.6  

>SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 275

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 15/27 (55%), Positives = 16/27 (59%), Gaps = 2/27 (7%)
 Frame = +3

Query: 318 RRLSVGGGVLRVIW--RTPSGGSGCWR 392
           RRL  GGGVLRV W  + P  G G  R
Sbjct: 70  RRLERGGGVLRVEWAKQPPPSGPGSKR 96


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 21/84 (25%), Positives = 30/84 (35%)
 Frame = -2

Query: 605 ERHRPDARTGGNPDVALSCRPSTGTSRSNHAPRGPALSGRRARRVVYLTMPPARAPGPRG 426
           E H    +    P V     P   +S    +P       R  R+V+    PP  A    G
Sbjct: 614 EAHEAVPQKPSAPQVTRLMAPQDSSSVVTPSPTSLLDPARAVRKVIDGIDPPKEAGA--G 671

Query: 425 CVGE*LKFGQAPPATAPSTWRTPD 354
              + ++     P T P TW +PD
Sbjct: 672 ATAD-VESAANSPITPPRTWHSPD 694


>SPAC1142.02c ||SPAC17G6.19c|TPR repeat protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 317

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = -2

Query: 356 DDAQHASTDRQPTGRASVPDSGTVFCAGIPQL 261
           D +  +  D+  T   + PD G++F  G+P L
Sbjct: 203 DSSATSGADQARTSAGAAPDLGSIFGGGMPDL 234


>SPAC2F3.13c |||queuine tRNA-ribosyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 348

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 9/23 (39%), Positives = 17/23 (73%)
 Frame = +3

Query: 546 SAGESHIRVATSAGIRTMTLSMH 614
           SAG+SHI + T++G + +T  ++
Sbjct: 103 SAGQSHINIVTASGAKKLTNDLY 125


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,224,648
Number of Sequences: 5004
Number of extensions: 63265
Number of successful extensions: 148
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 147
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 438479610
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)