Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP07_FL5_H06
(881 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1142.02c ||SPAC17G6.19c|TPR repeat protein|Schizosaccharomyc... 47 4e-06
SPBC543.02c |||DNAJ/TPR domain protein DNAJC7 family|Schizosacch... 45 1e-05
SPAC17C9.01c |nuc2|apc3, SPAC1851.01|anaphase-promoting complex ... 40 4e-04
SPBC3F6.01c |||serine/threonine protein phosphatase |Schizosacch... 36 0.010
SPCC1919.05 |||TPR repeat protein Ski3 |Schizosaccharomyces pomb... 33 0.071
SPAC6B12.12 |tom70||mitochondrial TOM complex subunit Tom70|Schi... 32 0.094
SPAC19B12.01 ||SPAC4F10.21|TPR repeat protein, TTC27 family|Schi... 32 0.12
SPBC32H8.06 |mug93||TPR repeat protein, meiotically spliced|Schi... 32 0.12
SPBC725.07 |pex5||peroxisomal targeting signal receptor |Schizos... 31 0.22
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha... 30 0.38
SPBC11G11.01 |fis1||mitochondrial fission protein Fis1 |Schizosa... 29 0.66
SPAC6F12.14 |cut23|apc8|anaphase-promoting complex subunit Apc8 ... 29 0.66
SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regula... 29 0.88
SPCC645.14c |sti1||chaperone activator Sti1 |Schizosaccharomyces... 27 2.7
SPAC6F12.15c |cut9|dre1|anaphase-promoting complex subunit Cut9|... 27 3.5
SPCC338.16 |pof3||F-box protein Pof3|Schizosaccharomyces pombe|c... 27 3.5
SPAC17A2.04c |||HSP chaperone complex subunit |Schizosaccharomyc... 27 4.7
SPBC418.02 |||NatA N-acetyltransferase complex subunit |Schizosa... 27 4.7
SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium tra... 27 4.7
SPAC2F3.10 |||GARP complex subunit Vps54 |Schizosaccharomyces po... 26 6.2
SPAC644.11c |||pyruvate dehydrogenase |Schizosaccharomyces pombe... 26 8.2
SPCC320.07c |mde7||RNA-binding protein Mde7|Schizosaccharomyces ... 26 8.2
>SPAC1142.02c ||SPAC17G6.19c|TPR repeat protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 317
Score = 46.8 bits (106), Expect = 4e-06
Identities = 27/76 (35%), Positives = 37/76 (48%)
Frame = +2
Query: 428 EGIEHFKAGRHSEAFQCLNKALSIDPRNVEGLVARGALYANSGTFKKAIEDFETSLKLNP 607
EG A + +A KA+ IDP + R A Y G F+ A+ED T L L+P
Sbjct: 89 EGNNAIAAKDYQKALDLYTKAIEIDPTSPVYYSNRAAAYNQLGQFENAVEDALTCLSLDP 148
Query: 608 NHANARKYLGETLVAL 655
+HA A LG ++L
Sbjct: 149 HHARAFGRLGRAKLSL 164
>SPBC543.02c |||DNAJ/TPR domain protein DNAJC7
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 476
Score = 45.2 bits (102), Expect = 1e-05
Identities = 33/103 (32%), Positives = 52/103 (50%), Gaps = 6/103 (5%)
Frame = +2
Query: 491 LSIDPRNVEGLVARGALYANSGTFKKAIEDFETSLKLNPNHANARKYLGETLVALERSYE 670
L ++P+NVE LV RG + SG KAI F+ +LKL+P+ A K L + + LE +
Sbjct: 170 LRLNPKNVEALVLRGKVMYYSGENAKAITHFQEALKLDPDCTTA-KTLFKQVRKLENTKN 228
Query: 671 DENQI------TEAQKAYEDCLAIIPFHEEAQTRXIF*KARPL 781
N + +A + Y + L I P ++E + +A L
Sbjct: 229 QGNDLFRQGNYQDAYEKYSEALQIDPDNKETVAKLYMNRATVL 271
>SPAC17C9.01c |nuc2|apc3, SPAC1851.01|anaphase-promoting complex
subunit Apc3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 665
Score = 40.3 bits (90), Expect = 4e-04
Identities = 19/73 (26%), Positives = 40/73 (54%)
Frame = +2
Query: 458 HSEAFQCLNKALSIDPRNVEGLVARGALYANSGTFKKAIEDFETSLKLNPNHANARKYLG 637
HS+A +C+N+A+ +DP +G ++ + ++K+ F ++++N H NA + G
Sbjct: 447 HSQALKCINRAIQLDPTFEYAYTLQGHEHSANEEYEKSKTSFRKAIRVNVRHYNA--WYG 504
Query: 638 ETLVALERSYEDE 676
+V L+ D+
Sbjct: 505 LGMVYLKTGRNDQ 517
Score = 38.3 bits (85), Expect = 0.001
Identities = 20/75 (26%), Positives = 38/75 (50%)
Frame = +2
Query: 431 GIEHFKAGRHSEAFQCLNKALSIDPRNVEGLVARGALYANSGTFKKAIEDFETSLKLNPN 610
G+ + K GR+ +A +A I+P N + G +Y +KKA++ ++ + KL+
Sbjct: 506 GMVYLKTGRNDQADFHFQRAAEINPNNSVLITCIGMIYERCKDYKKALDFYDRACKLDEK 565
Query: 611 HANARKYLGETLVAL 655
+ AR + L+ L
Sbjct: 566 SSLARFKKAKVLILL 580
Score = 25.8 bits (54), Expect = 8.2
Identities = 13/42 (30%), Positives = 23/42 (54%)
Frame = +2
Query: 533 GALYANSGTFKKAIEDFETSLKLNPNHANARKYLGETLVALE 658
G +Y +G KKA + F ++ +NP + +A + L V L+
Sbjct: 122 GTMYKKAGFLKKATDCFVEAVSINPYNFSAFQNLTAIGVPLD 163
>SPBC3F6.01c |||serine/threonine protein phosphatase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 473
Score = 35.5 bits (78), Expect = 0.010
Identities = 27/89 (30%), Positives = 40/89 (44%)
Frame = +2
Query: 374 ADELRQAQASKWAFRSVAEGIEHFKAGRHSEAFQCLNKALSIDPRNVEGLVARGALYANS 553
A EL A ++ RS+A H K+ + A +KA+ DP + R +
Sbjct: 31 AIELDSTNAILYSNRSLA----HLKSEDYGLAINDASKAIECDPEYAKAYFRRATAHIAI 86
Query: 554 GTFKKAIEDFETSLKLNPNHANARKYLGE 640
K+A+ DF +L L P+ ARK L E
Sbjct: 87 FQPKEAVGDFRKALALAPSDPAARKKLRE 115
>SPCC1919.05 |||TPR repeat protein Ski3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1389
Score = 32.7 bits (71), Expect = 0.071
Identities = 15/36 (41%), Positives = 22/36 (61%)
Frame = +2
Query: 533 GALYANSGTFKKAIEDFETSLKLNPNHANARKYLGE 640
G L N+ F KAI F+++L+++P NA LGE
Sbjct: 657 GVLELNAKNFHKAIVHFQSALRISPKDTNAWSGLGE 692
Score = 31.1 bits (67), Expect = 0.22
Identities = 30/140 (21%), Positives = 55/140 (39%)
Frame = +2
Query: 305 LGIANMHCTNFSYLRGRFASSEYADELRQAQASKWAFRSVAEGIEHFKAGRHSEAFQCLN 484
LG+ ++ NF F S+ LR + A+ + E + ++GR+ A + N
Sbjct: 656 LGVLELNAKNFHKAIVHFQSA-----LRISPKDTNAWSGLGEA--YARSGRYVSALKAFN 708
Query: 485 KALSIDPRNVEGLVARGALYANSGTFKKAIEDFETSLKLNPNHANARKYLGETLVALERS 664
+A +DP + L + G ++ A+ L + + L ET V L +
Sbjct: 709 RASILDPDDWYVKYFIATLEKDMGEYEVAVSTLSEILAVRSKELCVQVSLAETYVRLAKL 768
Query: 665 YEDENQITEAQKAYEDCLAI 724
Y + A + E + I
Sbjct: 769 YHARGFYSRAADSLEKSIQI 788
Score = 27.5 bits (58), Expect = 2.7
Identities = 16/55 (29%), Positives = 30/55 (54%)
Frame = +2
Query: 560 FKKAIEDFETSLKLNPNHANARKYLGETLVALERSYEDENQITEAQKAYEDCLAI 724
++ AIE + +L + N+ NA +LG +Y Q++E+++AY D + I
Sbjct: 18 YELAIEQSKKALSFDANNYNANVFLGV-------AYFSTKQLSESKEAYLDAIKI 65
>SPAC6B12.12 |tom70||mitochondrial TOM complex subunit
Tom70|Schizosaccharomyces pombe|chr 1|||Manual
Length = 625
Score = 32.3 bits (70), Expect = 0.094
Identities = 17/77 (22%), Positives = 36/77 (46%)
Frame = +2
Query: 443 FKAGRHSEAFQCLNKALSIDPRNVEGLVARGALYANSGTFKKAIEDFETSLKLNPNHANA 622
F +G +EA K++++D + + G + ++++ FE K PN +
Sbjct: 426 FVSGEFAEAISDYQKSIALDDSFIYSHIQLGVAQYKTHAIAESMKTFEDCKKRFPNSSEV 485
Query: 623 RKYLGETLVALERSYED 673
Y GE L+ ++ ++D
Sbjct: 486 YNYFGEILLD-QQKFDD 501
>SPAC19B12.01 ||SPAC4F10.21|TPR repeat protein, TTC27
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 817
Score = 31.9 bits (69), Expect = 0.12
Identities = 17/73 (23%), Positives = 30/73 (41%)
Frame = +2
Query: 431 GIEHFKAGRHSEAFQCLNKALSIDPRNVEGLVARGALYANSGTFKKAIEDFETSLKLNPN 610
G ++K G +A C N++L I+P + G + A+E F L +NP
Sbjct: 528 GKYYYKKGDLLQAMNCFNESLKINPLSYPTWFTYGCAALELQKYDAAMEAFSRCLSINPE 587
Query: 611 HANARKYLGETLV 649
+ L ++
Sbjct: 588 DGESWNNLASAML 600
>SPBC32H8.06 |mug93||TPR repeat protein, meiotically
spliced|Schizosaccharomyces pombe|chr 2|||Manual
Length = 383
Score = 31.9 bits (69), Expect = 0.12
Identities = 19/67 (28%), Positives = 33/67 (49%)
Frame = +2
Query: 434 IEHFKAGRHSEAFQCLNKALSIDPRNVEGLVARGALYANSGTFKKAIEDFETSLKLNPNH 613
+ H + +++ AL I+P + + + RG Y G A D+E SL+L+PN+
Sbjct: 49 LTHLRKKSYTKVVHDCTYALVINPYDKKVIWRRGLAYLRLGHPHLANRDWEHSLELDPNN 108
Query: 614 ANARKYL 634
+K L
Sbjct: 109 TYIQKSL 115
>SPBC725.07 |pex5||peroxisomal targeting signal receptor
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 598
Score = 31.1 bits (67), Expect = 0.22
Identities = 19/54 (35%), Positives = 23/54 (42%)
Frame = +2
Query: 539 LYANSGTFKKAIEDFETSLKLNPNHANARKYLGETLVALERSYEDENQITEAQK 700
L N G+ KA E S+K NP H A K+LG L + EA K
Sbjct: 303 LIKNGGSISKAAVLLEQSVKENPQHFEAWKWLGRIHTLLGNESRVVEALLEAVK 356
>SPBC23E6.09 |ssn6||transcriptional corepressor
Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1102
Score = 30.3 bits (65), Expect = 0.38
Identities = 27/105 (25%), Positives = 42/105 (40%), Gaps = 3/105 (2%)
Frame = +2
Query: 431 GIEHFKAGRHSEAFQCLNKALSIDPR--NVEGLVAR-GALYANSGTFKKAIEDFETSLKL 601
GI + + G H A + + L +DP V + R G +Y F +++E F L
Sbjct: 445 GILYDRYGSHEHAEEAFMQCLRMDPNFEKVNEIYFRLGIIYKQQHKFAQSLELFRHILDN 504
Query: 602 NPNHANARKYLGETLVALERSYEDENQITEAQKAYEDCLAIIPFH 736
P + + YE + A++AYE LA P H
Sbjct: 505 PPKPLTVL----DIYFQIGHVYEQRKEYKLAKEAYERVLAETPNH 545
Score = 27.1 bits (57), Expect = 3.5
Identities = 28/107 (26%), Positives = 44/107 (41%), Gaps = 9/107 (8%)
Frame = +2
Query: 344 LRGRFASSEYADE-LRQAQASKWAFRSVAE-----GIEHFKAGRHSEAFQCLNKALSIDP 505
L R+ S E+A+E Q F V E GI + + + +++ + L P
Sbjct: 447 LYDRYGSHEHAEEAFMQCLRMDPNFEKVNEIYFRLGIIYKQQHKFAQSLELFRHILDNPP 506
Query: 506 RNVEGL---VARGALYANSGTFKKAIEDFETSLKLNPNHANARKYLG 637
+ + L G +Y +K A E +E L PNHA + LG
Sbjct: 507 KPLTVLDIYFQIGHVYEQRKEYKLAKEAYERVLAETPNHAKVLQQLG 553
>SPBC11G11.01 |fis1||mitochondrial fission protein Fis1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 160
Score = 29.5 bits (63), Expect = 0.66
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +2
Query: 434 IEHFKAGRHSEAFQCLNKALSIDPRNVEGLVARGALY 544
+ H+K ++ E+ + LN LS DP + E L + LY
Sbjct: 86 LSHYKLKQYEESRRYLNMLLSKDPNSPEALKLKNRLY 122
>SPAC6F12.14 |cut23|apc8|anaphase-promoting complex subunit Apc8
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 565
Score = 29.5 bits (63), Expect = 0.66
Identities = 18/60 (30%), Positives = 30/60 (50%)
Frame = +2
Query: 488 ALSIDPRNVEGLVARGALYANSGTFKKAIEDFETSLKLNPNHANARKYLGETLVALERSY 667
A SID E G Y+ +KA+ F+ +L+LN N+ +A +G V L+ ++
Sbjct: 330 ASSIDKFRPETCSIIGNYYSLLSEHEKAVTYFKRALQLNRNYLSAWTLMGHEYVELKNTH 389
>SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regulator
protein Rif1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1400
Score = 29.1 bits (62), Expect = 0.88
Identities = 29/110 (26%), Positives = 48/110 (43%), Gaps = 4/110 (3%)
Frame = +2
Query: 182 LTTSP*IYKKTMDMKGENYEAILEKSPGFNNPNC----IQFLSEHLGIANMHCTNFSYLR 349
L++SP ++ K N+ + LE SPG N P+ L ++++ NF
Sbjct: 28 LSSSP---SSSIRKKKVNFSSELENSPGGNRPSFGLPKRGILKTSTPLSSIKQPNFQSFE 84
Query: 350 GRFASSEYADELRQAQASKWAFRSVAEGIEHFKAGRHSEAFQCLNKALSI 499
G SE L++ Q+S F S E ++H + E + L+ L I
Sbjct: 85 GN--ESEKETSLQELQSS---FCSGIENLQHVEKSARIETYSKLSSFLKI 129
>SPCC645.14c |sti1||chaperone activator Sti1 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 591
Score = 27.5 bits (58), Expect = 2.7
Identities = 23/105 (21%), Positives = 44/105 (41%), Gaps = 2/105 (1%)
Frame = +2
Query: 332 NFSYLRGRFASS--EYADELRQAQASKWAFRSVAEGIEHFKAGRHSEAFQCLNKALSIDP 505
N + G FA++ EY + ++A + F + A + K +E + NKA+ +DP
Sbjct: 407 NELFKSGDFANAIKEYTEMTKRAPSDPRGFGNRAAA--YLKVMAPAECIRDCNKAIELDP 464
Query: 506 RNVEGLVARGALYANSGTFKKAIEDFETSLKLNPNHANARKYLGE 640
+ V + + K I+ + +++ N K L E
Sbjct: 465 NFAKAYVRKAQALFMLKDYNKCIDACNEASEVDRREPNTGKNLRE 509
>SPAC6F12.15c |cut9|dre1|anaphase-promoting complex subunit
Cut9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 671
Score = 27.1 bits (57), Expect = 3.5
Identities = 24/118 (20%), Positives = 41/118 (34%)
Frame = +2
Query: 293 LSEHLGIANMHCTNFSYLRGRFASSEYADELRQAQASKWAFRSVAEGIEHFKAGRHSEAF 472
L LG+ + ++ F ++ + Q+ WA G + K + A
Sbjct: 477 LLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAI 536
Query: 473 QCLNKALSIDPRNVEGLVARGALYANSGTFKKAIEDFETSLKLNPNHANARKYLGETL 646
LN+ L + + A +Y + AI SL ++PN A L L
Sbjct: 537 DALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRAL 594
>SPCC338.16 |pof3||F-box protein Pof3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 577
Score = 27.1 bits (57), Expect = 3.5
Identities = 14/52 (26%), Positives = 27/52 (51%)
Frame = +2
Query: 446 KAGRHSEAFQCLNKALSIDPRNVEGLVARGALYANSGTFKKAIEDFETSLKL 601
K+G++S+A + + ++ RN G + G L G KKA + + L++
Sbjct: 53 KSGQYSQAELDAKRMIHLNARNARGYLRLGKLLQLDGFDKKADQLYTQGLRM 104
>SPAC17A2.04c |||HSP chaperone complex subunit |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 358
Score = 26.6 bits (56), Expect = 4.7
Identities = 27/112 (24%), Positives = 49/112 (43%), Gaps = 4/112 (3%)
Frame = +2
Query: 431 GIEHFKAGRHSEAFQCLNKALSIDPRNVEGLVA----RGALYANSGTFKKAIEDFETSLK 598
G E F + R+ +A + KAL+ + + +A R A +++ + D L+
Sbjct: 71 GNECFASKRYKDAEEFYTKALAQKCGDKDIEIACYSNRAACNLLFENYRQVLNDCAQVLQ 130
Query: 599 LNPNHANARKYLGETLVALERSYEDENQITEAQKAYEDCLAIIPFHEEAQTR 754
+ HA A + LVAL+R E + I + + AI+ +E Q +
Sbjct: 131 RDSTHAKAYYRSAKALVALKRYDEAKECIRLCSLVHPNDPAILALSKELQKK 182
>SPBC418.02 |||NatA N-acetyltransferase complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 695
Score = 26.6 bits (56), Expect = 4.7
Identities = 20/102 (19%), Positives = 45/102 (44%)
Frame = +2
Query: 434 IEHFKAGRHSEAFQCLNKALSIDPRNVEGLVARGALYANSGTFKKAIEDFETSLKLNPNH 613
I+ F+ G++S++ + + L P++ + + G + A+ + ++P
Sbjct: 16 IDQFEKGQYSKSLKTIQSVLKKKPKHPDSVALLGLNLCKLHDSRSALLKCGYASSIDPKS 75
Query: 614 ANARKYLGETLVALERSYEDENQITEAQKAYEDCLAIIPFHE 739
++ L + R +D N + K Y++ LAI P +E
Sbjct: 76 ----QFCWHALAIVYRETKDYNN---SLKCYQNALAISPNNE 110
>SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium
transporting Cta4 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1211
Score = 26.6 bits (56), Expect = 4.7
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = +2
Query: 602 NPNHANARKYLGETLVALERSYEDENQITEAQKAYE 709
NP+ ++ L + L LE + Q+TEA+KA E
Sbjct: 896 NPHREKTQEGLNKVLEDLETKKASDVQLTEAEKAAE 931
>SPAC2F3.10 |||GARP complex subunit Vps54 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 949
Score = 26.2 bits (55), Expect = 6.2
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = +2
Query: 644 LVALERSYEDENQITEAQKAYEDCLAIIPFHEEA 745
L++ E EDEN K EDC A + F +++
Sbjct: 676 LLSPEAEKEDENHRVHHVKVSEDCTATVSFGKQS 709
>SPAC644.11c |||pyruvate dehydrogenase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 425
Score = 25.8 bits (54), Expect = 8.2
Identities = 11/38 (28%), Positives = 19/38 (50%)
Frame = -2
Query: 583 KIFYGLFECSTIGVQCSSSNKTLYISRIYAQSFIQALK 470
++ YGLFE I + C S + +Y+ + + LK
Sbjct: 262 RLAYGLFEAPEIQIICDPSLEMMYVESHLNHAVFEILK 299
>SPCC320.07c |mde7||RNA-binding protein Mde7|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 761
Score = 25.8 bits (54), Expect = 8.2
Identities = 37/188 (19%), Positives = 70/188 (37%), Gaps = 18/188 (9%)
Frame = +2
Query: 188 TSP*IYKKTMDMKGENYEAILEKSPGFNNPNCIQFLSEHLGIANMHCTNFSYLRGRFAS- 364
T+P +Y + + NY++ P F+ N +++ + + T++ + F S
Sbjct: 308 TTPSLYSQRLS---NNYDSTTPGFPRFSPANFDSVINKDVTSESRMSTSYPAVLEAFKSF 364
Query: 365 -------SEYADELRQAQA----SKWAFR-----SVAEGIEHFKAGRHSEAFQCLNKALS 496
+EY ++ R + S W R S + + F+ ++S+ Q + L+
Sbjct: 365 NPIKAPKAEYLNQSRASMGNPSPSNWNNRLLQPSSKEQAVYSFQTQKNSKGLQFTSNELT 424
Query: 497 IDPRNVEGLVARGALYANSGTFKKAIEDF-ETSLKLNPNHANARKYLGETLVALERSYED 673
L A S + +F +TS PNH NA + + SY
Sbjct: 425 NPTAKYSQLPNNIANIGESNSLSNQPNNFAQTSFDYQPNHPNAISPKAKFSLPSRPSYHK 484
Query: 674 ENQITEAQ 697
+N Q
Sbjct: 485 DNSFISKQ 492
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,343,070
Number of Sequences: 5004
Number of extensions: 66624
Number of successful extensions: 220
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 202
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 219
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 442483990
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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