Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP07_FL5_H06
         (881 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              26   0.53 
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    25   1.2  
DQ435325-1|ABD92640.1|  160|Apis mellifera OBP7 protein.               23   2.8  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   2.8  
DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex det...    22   6.5  

>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 25.8 bits (54), Expect = 0.53
 Identities = 9/16 (56%), Positives = 13/16 (81%)
 Frame = +1

Query: 82  EVIPDTDKMVCGMKGV 129
           +VIP T + VCG+KG+
Sbjct: 532 DVIPGTQEHVCGVKGI 547


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = -3

Query: 423 TERNAHLLACAWRNSSAYSDEANL 352
           T+RN +LLA + RN +  +++ NL
Sbjct: 370 TQRNEYLLALSDRNQNVLNNDLNL 393


>DQ435325-1|ABD92640.1|  160|Apis mellifera OBP7 protein.
          Length = 160

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 11/47 (23%), Positives = 21/47 (44%)
 Frame = +3

Query: 318 TCTAQISHI*EEDSLHRNTQMNYAKHKQVNGHFVLWQKALNILKLED 458
           TC  + SHI + D +  +  +  A  K ++    +  + +N  K  D
Sbjct: 80  TCALEKSHIIQNDEIQLDKLVEMANRKNISIDVKMLSECINANKSTD 126


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 7/27 (25%), Positives = 17/27 (62%)
 Frame = -1

Query: 485 YSSIEMLQNVFQL*NVQCLLPQNEMPI 405
           +S  ++  N  +  N+QC++P  ++P+
Sbjct: 588 FSFTKLPMNAGEFANLQCIVPTGDLPL 614


>DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
 Frame = -3

Query: 174 EAERRLRRGIIGP-SRHTLHAANHFVCIWNNFYDFAANS 61
           E ER     II   S  T+H  N++   +NN Y++  N+
Sbjct: 72  ERERSREPKIISSLSNKTIHNNNNYKYNYNNKYNYNNNN 110


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 216,776
Number of Sequences: 438
Number of extensions: 4076
Number of successful extensions: 15
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28644972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)