Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP07_FL5_H03
         (860 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   3.6  
DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    22   6.3  
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    22   8.4  
AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength rhodo...    22   8.4  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 23.0 bits (47), Expect = 3.6
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +1

Query: 169  LLGVQQDNVYPQAYIRSEIRTLLSLA 246
            L+ VQ +N YP+  +  E+R  L  A
Sbjct: 1160 LIIVQAENAYPEVELDRELRPYLRTA 1185


>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 22.2 bits (45), Expect = 6.3
 Identities = 10/44 (22%), Positives = 21/44 (47%)
 Frame = -3

Query: 132 YVILTIHFNTCPTLTSTYNSH*ITQRXQGYSKCTRQAQVQRNPV 1
           Y+++ I       LT+T N + ++     +    R++  QRN +
Sbjct: 241 YILIAIKLRRSRMLTATVNRNHLSGGTNHWDSGRRKSAAQRNVI 284


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 21.8 bits (44), Expect = 8.4
 Identities = 14/46 (30%), Positives = 21/46 (45%), Gaps = 6/46 (13%)
 Frame = +2

Query: 230 LYSHW---RDVFEH---VRSTAKKKHYADQNTSSGTPQERECSIRK 349
           +YS+W   + V  H   +R  AKK + A   +S       EC + K
Sbjct: 233 IYSYWFIIQAVAAHEKNMREQAKKMNVASLRSSENQNTSAECKLAK 278


>AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 154

 Score = 21.8 bits (44), Expect = 8.4
 Identities = 14/46 (30%), Positives = 21/46 (45%), Gaps = 6/46 (13%)
 Frame = +2

Query: 230 LYSHW---RDVFEH---VRSTAKKKHYADQNTSSGTPQERECSIRK 349
           +YS+W   + V  H   +R  AKK + A   +S       EC + K
Sbjct: 109 IYSYWFIIQAVAAHEKNMREQAKKMNVASLRSSENQNTSAECKLAK 154


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 210,762
Number of Sequences: 438
Number of extensions: 3914
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27795333
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)