Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP07_FL5_H02
         (801 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    31   0.14 
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    30   0.33 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    27   3.1  
SPBC2G2.14 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    26   7.2  
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo...    26   7.2  

>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 31.5 bits (68), Expect = 0.14
 Identities = 12/26 (46%), Positives = 12/26 (46%)
 Frame = -2

Query: 722 PXXXPPPPPPXXXXXXXXQXXXPPPP 645
           P   PPPPPP        Q   PPPP
Sbjct: 5   PPGNPPPPPPPPGFEPPSQPPPPPPP 30



 Score = 29.9 bits (64), Expect = 0.44
 Identities = 13/31 (41%), Positives = 13/31 (41%)
 Frame = -1

Query: 366 PXKKGXGXXPPXXXGPPPPPGXXKKXXXGXP 274
           P     G  PP    PPPPPG  KK     P
Sbjct: 11  PPPPPPGFEPPSQPPPPPPPGYVKKRKNKTP 41



 Score = 26.2 bits (55), Expect = 5.4
 Identities = 13/33 (39%), Positives = 14/33 (42%)
 Frame = -3

Query: 727 PTXXXPXPPPPRXXVXXXXXNXPXPPPXPGGXK 629
           P    P PPPP         + P PPP PG  K
Sbjct: 5   PPGNPPPPPPP---PGFEPPSQPPPPPPPGYVK 34


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 30.3 bits (65), Expect = 0.33
 Identities = 11/23 (47%), Positives = 11/23 (47%)
 Frame = -2

Query: 710 PPPPPPXXXXXXXXQXXXPPPPP 642
           PPPPPP            PPPPP
Sbjct: 761 PPPPPPPPGVAGAGPPPPPPPPP 783



 Score = 29.1 bits (62), Expect = 0.77
 Identities = 14/48 (29%), Positives = 15/48 (31%)
 Frame = -2

Query: 791 PXPXPXPXXGGAGGXXHXXXXTXPXXXPPPPPPXXXXXXXXQXXXPPP 648
           P P P P  GG                PPPPPP        +   P P
Sbjct: 750 PVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPPAVSAGGSRYYAPAP 797



 Score = 27.9 bits (59), Expect = 1.8
 Identities = 11/27 (40%), Positives = 11/27 (40%)
 Frame = -2

Query: 722 PXXXPPPPPPXXXXXXXXQXXXPPPPP 642
           P    PPPPP            PPPPP
Sbjct: 756 PIMGGPPPPPPPPGVAGAGPPPPPPPP 782



 Score = 26.6 bits (56), Expect = 4.1
 Identities = 10/23 (43%), Positives = 10/23 (43%)
 Frame = -2

Query: 710 PPPPPPXXXXXXXXQXXXPPPPP 642
           PPPPPP            P PPP
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPP 754



 Score = 26.6 bits (56), Expect = 4.1
 Identities = 11/27 (40%), Positives = 11/27 (40%)
 Frame = -3

Query: 727 PTXXXPXPPPPRXXVXXXXXNXPXPPP 647
           P    P PPPP   V       P PPP
Sbjct: 756 PIMGGPPPPPPPPGVAGAGPPPPPPPP 782


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 16/54 (29%), Positives = 17/54 (31%), Gaps = 4/54 (7%)
 Frame = -2

Query: 791 PXPXPXPXXGGAGGXXHXXXXTXPXXXPPPPPP----XXXXXXXXQXXXPPPPP 642
           P P P P     G        +     PPPPPP            Q    PPPP
Sbjct: 311 PPPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPP 364


>SPBC2G2.14 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 533

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 11/38 (28%), Positives = 17/38 (44%)
 Frame = -3

Query: 256 PPXXPPGGXRTPXXFXPFFQNQGSRVKKNLGXRGGIPD 143
           P   PP   ++P      F +  +R KKN G +   P+
Sbjct: 224 PSFAPPSNVKSPVQQHRSFVSSSARAKKNWGRQSNSPN 261


>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1224

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 13/48 (27%), Positives = 14/48 (29%)
 Frame = -2

Query: 785  PXPXPXXGGAGGXXHXXXXTXPXXXPPPPPPXXXXXXXXQXXXPPPPP 642
            P   P  G +         T      PPPPP             PPPP
Sbjct: 882  PVRSPFPGASSAQPAAMSRTSSVSTLPPPPPTASMTASAPAIASPPPP 929


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,188,259
Number of Sequences: 5004
Number of extensions: 35681
Number of successful extensions: 160
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 388424860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)