Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP07_FL5_H01
(875 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 31 0.22
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 31 0.28
SPAC17G6.02c |||RTA1-like protein|Schizosaccharomyces pombe|chr ... 28 1.5
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 28 2.0
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 27 2.7
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces... 27 2.7
SPAC6G9.11 |syb1||synaptobrevin |Schizosaccharomyces pombe|chr 1... 27 2.7
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1... 27 3.5
SPCC330.04c |mug135||DUF1773 family protein 3|Schizosaccharomyce... 26 8.1
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 31.1 bits (67), Expect = 0.22
Identities = 24/111 (21%), Positives = 42/111 (37%), Gaps = 4/111 (3%)
Frame = +1
Query: 277 TGTETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVSPSAPSLKIPVTVDLCWTTADVT 456
T T S +T + +S+ Y + + +S S P PVT C T+ V
Sbjct: 482 TSTPVTSTPLTTTNCTTSTSV--PYTSTPVTSSNYTISSSTPVTSTPVTTTNCTTSTSVL 539
Query: 457 VEGVNVLATPSSSRITIGGLALMHQATLPCDLGYI----NPIIKSPIPYTN 597
V +TP ++ ++ + +T Y P+ +P+ TN
Sbjct: 540 YTSTPVTSTPLATTNCTTSTSVPYTSTPVTSSNYTISSSTPVTSTPVTTTN 590
Score = 25.8 bits (54), Expect = 8.1
Identities = 22/109 (20%), Positives = 40/109 (36%), Gaps = 6/109 (5%)
Frame = +1
Query: 289 TKSNSVTVQSLPNVSSIIKG--YRDAYLVNLEAVVSPSAPSLKIPVTVDLCWTTADVTVE 462
T +N T S+P S+ + +V S P P+T C T+ +
Sbjct: 423 TTTNCTTSTSVPYTSTPVTSTPLATTNCTTSTSVPYTSTPVTSTPLTTTNCTTSTSIPYT 482
Query: 463 GVNVLATPSSSRITIGGLALMHQATLPCDLGYI----NPIIKSPIPYTN 597
V +TP ++ ++ + +T Y P+ +P+ TN
Sbjct: 483 STPVTSTPLTTTNCTTSTSVPYTSTPVTSSNYTISSSTPVTSTPVTTTN 531
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 30.7 bits (66), Expect = 0.28
Identities = 17/41 (41%), Positives = 19/41 (46%)
Frame = +2
Query: 539 SPAISATSTRSSNPRFHTPTTPDLTSISINPLNAVLKGVRA 661
S IS +ST N FH PT TS S A KGV +
Sbjct: 801 SRTISTSSTNEYNTSFHAPTVSSTTSSSSTTSLAANKGVNS 841
>SPAC17G6.02c |||RTA1-like protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 324
Score = 28.3 bits (60), Expect = 1.5
Identities = 14/36 (38%), Positives = 21/36 (58%)
Frame = +1
Query: 4 WDDLFMEEIVPLXVSAASAIPSLVNAFSSSKPPQTD 111
W D+F + +P+ ++A IPSL A SK P T+
Sbjct: 239 WFDIF--DFIPMIFTSALLIPSLYPALERSKLPFTE 272
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 27.9 bits (59), Expect = 2.0
Identities = 23/64 (35%), Positives = 29/64 (45%), Gaps = 2/64 (3%)
Frame = +3
Query: 564 PDHQIPDSIHQPPQT*HPFPSIP*TPY*KEFAPGLKPPLSSXAP--SAYLTPSSLGMAKX 737
P P S +PP + P PSIP P +P PP+ S AP + L P + A
Sbjct: 128 PAPPTPQSELRPPTSAPPRPSIP-PP-----SPASAPPIPSKAPPIPSSLPPPAQPAAPV 181
Query: 738 GSPP 749
SPP
Sbjct: 182 KSPP 185
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 27.5 bits (58), Expect = 2.7
Identities = 21/57 (36%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
Frame = +3
Query: 531 SHPPLRSRLHQPDHQIPDSIHQPPQT*HPFPSIP*TPY*KEFAPGLKPPL-SSXAPS 698
S PP+R + P + PP + P PS P P AP PPL +S APS
Sbjct: 1688 STPPVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAP--PPPLPASSAPS 1742
>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 3699
Score = 27.5 bits (58), Expect = 2.7
Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Frame = +1
Query: 259 RLYFDLTGTETKSNSVTVQSLPNVSSIIKGYRD-AYLVNLEAVVS 390
R+Y L T ++S + PN S + +GY + A+L+N A V+
Sbjct: 2840 RVYLPLVPTIQANSSADSSNPPNTSFLFRGYHETAWLINRFAHVA 2884
>SPAC6G9.11 |syb1||synaptobrevin |Schizosaccharomyces pombe|chr
1|||Manual
Length = 121
Score = 27.5 bits (58), Expect = 2.7
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = -1
Query: 524 IRARPPIVMREDEGVASTLTPSTVTSAVVQQRSTVTGILR 405
I A P +R AS+ TP+ T+A+ QQ GI+R
Sbjct: 9 IPAEPSAAVRSGNAAASS-TPNMKTAAIQQQIDDTVGIMR 47
>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 857
Score = 27.1 bits (57), Expect = 3.5
Identities = 14/27 (51%), Positives = 16/27 (59%), Gaps = 3/27 (11%)
Frame = +2
Query: 536 PSPAISATSTRSSN---PRFHTPTTPD 607
P P+IS T+T SS H PTTPD
Sbjct: 273 PKPSISTTTTGSSYRSAESSHAPTTPD 299
>SPCC330.04c |mug135||DUF1773 family protein 3|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 357
Score = 25.8 bits (54), Expect = 8.1
Identities = 9/25 (36%), Positives = 15/25 (60%)
Frame = -2
Query: 100 GVWKKRKH*PRREWPKRQKRXKAQF 26
G WKK + + EW K ++ KA++
Sbjct: 119 GEWKKAREEDKAEWKKAREEDKAEW 143
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,323,351
Number of Sequences: 5004
Number of extensions: 65567
Number of successful extensions: 252
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 223
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 250
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 438479610
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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