Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP07_FL5_G09
(916 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1136 + 24218601-24218734,24218769-24219906 36 0.059
05_01_0364 + 2855760-2855801,2855940-2856015,2856759-2857747 30 2.2
08_02_1291 + 25930056-25930067,25930289-25930334,25930434-259305... 29 3.9
04_01_0159 - 1824343-1824405,1824485-1824595,1825282-1825448,182... 29 3.9
04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076 29 5.2
12_02_0581 - 20785198-20785962,20786107-20786649 28 9.0
12_02_0019 - 12366259-12366819,12367653-12367685,12368294-123683... 28 9.0
11_06_0411 - 23230580-23230795,23231407-23231862,23232142-232321... 28 9.0
07_03_0809 - 21669632-21669637,21669871-21670131,21670573-216707... 28 9.0
04_03_1027 - 21820843-21820878,21820974-21821117,21821220-218213... 28 9.0
03_04_0225 + 18953016-18954686 28 9.0
02_05_0822 + 32025992-32026696,32027237-32027314,32027547-320277... 28 9.0
02_01_0296 + 1978565-1981197,1981216-1981639,1982280-1982771,198... 28 9.0
01_03_0098 + 12538501-12538527,12538930-12539355,12539470-12539892 28 9.0
>07_03_1136 + 24218601-24218734,24218769-24219906
Length = 423
Score = 35.5 bits (78), Expect = 0.059
Identities = 26/76 (34%), Positives = 29/76 (38%), Gaps = 2/76 (2%)
Frame = -3
Query: 869 GGXXXGPRTXXGXX--GAGGGXGSPXXEXECRXXPXAXPPAPGXPGAXXXGGSXRKXXSG 696
GG GP G G GGG G P A PPAPG G GG+ R+ G
Sbjct: 94 GGGAPGPLGGGGARPPGGGGGGGPPSLPPGAGGGGGARPPAPGGGGG---GGAPRRVLGG 150
Query: 695 TXPNAGXSXPRPRSXG 648
G + RP G
Sbjct: 151 --GGGGGALARPPGGG 164
>05_01_0364 + 2855760-2855801,2855940-2856015,2856759-2857747
Length = 368
Score = 30.3 bits (65), Expect = 2.2
Identities = 17/56 (30%), Positives = 20/56 (35%), Gaps = 2/56 (3%)
Frame = -3
Query: 869 GGXXXGPRTXXGXXGAGGGXG--SPXXEXECRXXPXAXPPAPGXPGAXXXGGSXRK 708
GG P+T G GGG G +P PP G G GG +K
Sbjct: 165 GGGGGSPKTMVAGDGQGGGAGAVAPPFAMTPHGKQPVAPPGNGNGGGGGGGGGGKK 220
>08_02_1291 +
25930056-25930067,25930289-25930334,25930434-25930546,
25930645-25930930,25931357-25931421,25931642-25931693,
25931774-25931883,25932611-25932641,25932853-25933004,
25934622-25934840
Length = 361
Score = 29.5 bits (63), Expect = 3.9
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = -2
Query: 237 HGGLGLTNVSMSQMQGQVDYDFGVGGRLPI 148
+GG L ++Q G Y +G GGRLP+
Sbjct: 100 YGGPALPRYGIAQFPGGSGYPYGYGGRLPM 129
>04_01_0159 -
1824343-1824405,1824485-1824595,1825282-1825448,
1825853-1826029,1826404-1826656
Length = 256
Score = 29.5 bits (63), Expect = 3.9
Identities = 17/50 (34%), Positives = 23/50 (46%)
Frame = -1
Query: 409 TGAESVVPGGGCSRV*QYHVRPPQAFRGHQPSAAAPFPLRSNSVVCRSNS 260
T + S GGCS + PP AFRG+ + P + V CR+ S
Sbjct: 59 TASASASASGGCSPAPPWAPSPP-AFRGNVKARYQPVMFNGSIVYCRTPS 107
>04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076
Length = 906
Score = 29.1 bits (62), Expect = 5.2
Identities = 19/60 (31%), Positives = 21/60 (35%)
Frame = -3
Query: 827 GAGGGXGSPXXEXECRXXPXAXPPAPGXPGAXXXGGSXRKXXSGTXPNAGXSXPRPRSXG 648
GAG G G+P P PPAP A G P A + PRP G
Sbjct: 313 GAGAGTGAPPPPPAHPAAPAPPPPAPSPSAAGAGSG-----PPPPPPPAAPAAPRPPGPG 367
>12_02_0581 - 20785198-20785962,20786107-20786649
Length = 435
Score = 28.3 bits (60), Expect = 9.0
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 4/46 (8%)
Frame = +1
Query: 10 RSVVIKCRRLILFCYRFLL----TCAIASAAECENATSLSLMIDSL 135
RS++ KC+ L C F+L + I A C N S+SL ++ L
Sbjct: 208 RSLLGKCKSLEKLCLHFILGLTDSDMITLAQNCSNLRSISLQLEPL 253
>12_02_0019 -
12366259-12366819,12367653-12367685,12368294-12368363,
12368582-12368712,12369627-12369673,12369803-12369879,
12369963-12370027,12370105-12370191,12370300-12370389,
12370972-12371037,12371608-12371664,12371749-12371850,
12373018-12373554
Length = 640
Score = 28.3 bits (60), Expect = 9.0
Identities = 19/50 (38%), Positives = 21/50 (42%)
Frame = +2
Query: 383 AGDYALRARVSNNGSVSWIKRLDISTPISMQFRXLGPTTCRLARSSSGLR 532
AG A + S +G SW K L I P S Q G T S GLR
Sbjct: 70 AGREAQSSIFSTSGLSSWAKNLKIPQPSSGQESPTGKNTFSRLTSGLGLR 119
>11_06_0411 -
23230580-23230795,23231407-23231862,23232142-23232195,
23232251-23232367
Length = 280
Score = 28.3 bits (60), Expect = 9.0
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = +3
Query: 222 VRVHRADTGRSSNELDRQTTELERRG 299
V+ H + R S EL+RQ ELER+G
Sbjct: 89 VQRHGEELERQSRELERQREELERQG 114
>07_03_0809 -
21669632-21669637,21669871-21670131,21670573-21670752,
21671458-21672819
Length = 602
Score = 28.3 bits (60), Expect = 9.0
Identities = 15/52 (28%), Positives = 25/52 (48%)
Frame = +1
Query: 109 SLSLMIDSLLATYDRESPPDSKIVVNLTLHLRHANIRESESTVRILADLQMN 264
+L +D L+ YD+ PPDS+ V HA + +R+L + +N
Sbjct: 160 NLWTQVDILILRYDK--PPDSRFVQEALAAHAHATEGSETTAIRLLEVISLN 209
>04_03_1027 -
21820843-21820878,21820974-21821117,21821220-21821358,
21821522-21821652,21823615-21823670,21823964-21824258
Length = 266
Score = 28.3 bits (60), Expect = 9.0
Identities = 14/47 (29%), Positives = 24/47 (51%)
Frame = -3
Query: 398 ERSPRRWLQPRLAVPRQASTSVPRTPAKCCSPIPPAFQLSRLSIQFI 258
E + R W + RLA+ ++ V R K P+PP L+ L++ +
Sbjct: 47 EAAKRGWSEIRLAIEELSAVDVERRGGKPPPPLPPPPTLTFLALSHL 93
>03_04_0225 + 18953016-18954686
Length = 556
Score = 28.3 bits (60), Expect = 9.0
Identities = 18/58 (31%), Positives = 29/58 (50%)
Frame = +2
Query: 314 TWLVSSERLWRPDVVLLNAAATTAGDYALRARVSNNGSVSWIKRLDISTPISMQFRXL 487
+W+V+ + + D V AAA Y RA +G+ +W+ D++ IS QF L
Sbjct: 468 SWVVADDEMG--DAVRAAAAAVVVPAY--RALYRRHGTAAWMTPGDVNAMISRQFGGL 521
>02_05_0822 +
32025992-32026696,32027237-32027314,32027547-32027713,
32027811-32027885,32028624-32028742,32028908-32029204,
32029275-32029362,32029467-32029572,32029727-32029837,
32030520-32030683,32031237-32031357,32031958-32032182,
32032267-32032457,32032658-32032825,32032911-32033016,
32033301-32033438,32033533-32033697,32033777-32033980,
32034341-32034535,32034603-32034674,32034797-32034949
Length = 1215
Score = 28.3 bits (60), Expect = 9.0
Identities = 16/30 (53%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Frame = -1
Query: 346 PPQAFR-GHQPSAAAPFPLRSNSVVCRSNS 260
PP+ FR GH P AAAP PLR++ S S
Sbjct: 32 PPEKFRSGHLPRAAAP-PLRTDDGSVASGS 60
>02_01_0296 +
1978565-1981197,1981216-1981639,1982280-1982771,
1982950-1983087
Length = 1228
Score = 28.3 bits (60), Expect = 9.0
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = -3
Query: 407 GRGERSPRRWLQPRLAVPRQASTSVPRTP 321
GRG RS R L+P LA+ A + +P P
Sbjct: 442 GRGPRSTLRILRPGLAISEMARSMLPAEP 470
>01_03_0098 + 12538501-12538527,12538930-12539355,12539470-12539892
Length = 291
Score = 28.3 bits (60), Expect = 9.0
Identities = 22/83 (26%), Positives = 37/83 (44%), Gaps = 2/83 (2%)
Frame = +2
Query: 290 TQGEWGCSTWLVSSERLWRPDVVLLNAAATTAGDYALRARVSNNGSVSWIKRLDISTPIS 469
T G CS++L R+W +++ + LRA +N S + +D+STP +
Sbjct: 131 TVGRSFCSSFLA---RIWNNTTPIVDTGLSPGYAALLRALCPSNASATATTAIDVSTPAT 187
Query: 470 M--QFRXLGPTTCRLARSSSGLR 532
+ + L P L S + LR
Sbjct: 188 LDNNYYKLLPLNLGLFFSDNQLR 210
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,654,335
Number of Sequences: 37544
Number of extensions: 579036
Number of successful extensions: 2116
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1827
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2093
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2600672280
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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