Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP07_FL5_G03
         (876 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC36.10 |||mitochondrial intermembrane space protein sorting p...    60   5e-10
SPAP8A3.10 |||mitochondrial intermembrane space protein sorting ...    38   0.002
SPAC17G8.02 |||uridine ribohydrolase |Schizosaccharomyces pombe|...    27   3.5  
SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyc...    27   3.5  
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    27   4.6  
SPAC3G9.14 |sak1||transcriptional repressor Sak1|Schizosaccharom...    26   8.1  
SPCP25A2.02c |rhp26||SNF2 family helicase Rhp26|Schizosaccharomy...    26   8.1  
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces...    26   8.1  
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    26   8.1  
SPCC895.06 |||RNA polymerase II elongator complex subunit Elp2 |...    26   8.1  

>SPBC36.10 |||mitochondrial intermembrane space protein sorting
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 184

 Score = 59.7 bits (138), Expect = 5e-10
 Identities = 45/161 (27%), Positives = 82/161 (50%), Gaps = 2/161 (1%)
 Frame = +2

Query: 245 KYPFEMVMAAYERRFPNCPQIPVVLDCSITEDSWSSDDSQRDTTRRCQLNVEAP-YLLKK 421
           +YPFE V AA+ +++PN     V+     T D    D+    T R    +   P ++LK 
Sbjct: 11  QYPFEQVSAAHWQKYPNEHATHVI--AVDTLDRKVLDNGVLYTERLITCHQALPRWILKL 68

Query: 422 MIGVDYVYFIQKNHLDLKSRFLEIEATNETFATRVGVVEKCKYYVHPENSDWTCFELSAL 601
           + G    Y  + +++DLK+R L +  +N TF+ R+ V E   Y  HPE  + T F+  A 
Sbjct: 69  IDGAQDCYIRETSYVDLKARTLTLLTSNLTFSDRLRVDETVTYSPHPE-LEATVFQQEAR 127

Query: 602 LD-VKNFFGLESTVEKIAMKQYAANIAKGKELIESFMMEVH 721
           ++ +     L + +E+ ++  +    ++GKE  ES + +++
Sbjct: 128 IEALACMKRLSNLIEQWSVDGFGKKASRGKEGFESVLEKIN 168


>SPAP8A3.10 |||mitochondrial intermembrane space protein sorting
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 171

 Score = 37.5 bits (83), Expect = 0.002
 Identities = 30/142 (21%), Positives = 61/142 (42%)
 Frame = +2

Query: 263 VMAAYERRFPNCPQIPVVLDCSITEDSWSSDDSQRDTTRRCQLNVEAPYLLKKMIGVDYV 442
           V +A+  R+PN P    V+   + E  +  D+ +  T R        P     ++ V+  
Sbjct: 18  VSSAWLTRYPN-PYSLHVVSADVLE-RYVDDEGRLYTERLLVKQGRLPRWASDLLNVNKS 75

Query: 443 YFIQKNHLDLKSRFLEIEATNETFATRVGVVEKCKYYVHPENSDWTCFELSALLDVKNFF 622
           Y ++++ +D   + L+ E  N      + V+E  ++    EN   T  +  A       F
Sbjct: 76  YILERSVIDPSKQELKSETFNLDHVKILRVIEYSRFIQSSENCSKTIVDTIAKFVSPLRF 135

Query: 623 GLESTVEKIAMKQYAANIAKGK 688
           GL   V+K ++K++   ++  +
Sbjct: 136 GLGRRVQKYSLKRFQEQLSSSR 157


>SPAC17G8.02 |||uridine ribohydrolase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 330

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 15/38 (39%), Positives = 20/38 (52%)
 Frame = -1

Query: 702 DSISSLPLAILAAYCFIAIFSTVLSNPKKFFTSSRALS 589
           D + +L LA  A +C I   STV  N    FT+  AL+
Sbjct: 28  DDVVALTLAACAGHCKILGVSTVHGNTTLEFTTKNALA 65


>SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1428

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 16/65 (24%), Positives = 29/65 (44%)
 Frame = +2

Query: 215 KNTCLPFGVHKYPFEMVMAAYERRFPNCPQIPVVLDCSITEDSWSSDDSQRDTTRRCQLN 394
           K   + F   +  F   + A +++  N   +  +    I EDS S+DDS +D     + N
Sbjct: 342 KEAEIVFRKSRIEFMNKLKALQQKLENERIVEEIKKNGIQEDSQSTDDSSKDDDNNSESN 401

Query: 395 VEAPY 409
             +P+
Sbjct: 402 DMSPH 406


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 4924

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +2

Query: 527  GVVEKCKYYVHPENSDWTCFELSALLDVKNFFGL 628
            G VE C   +   N D   F+ ++LLD+K +  L
Sbjct: 2570 GTVEDCLRQLQKFNLDANKFQFTSLLDIKKWLNL 2603


>SPAC3G9.14 |sak1||transcriptional repressor
           Sak1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 766

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 19/64 (29%), Positives = 27/64 (42%), Gaps = 1/64 (1%)
 Frame = +2

Query: 506 ETFATRVGVVEKCKYYVHPENSDWTC-FELSALLDVKNFFGLESTVEKIAMKQYAANIAK 682
           E F  R  +  +     HP  SD     EL  L      + LES  EK+ M   +AN  K
Sbjct: 39  ENFLNRPSITSES---AHPRGSDLEQETELKRLALEHEHYSLESLAEKLRMDHVSANSEK 95

Query: 683 GKEL 694
            +++
Sbjct: 96  FRQV 99


>SPCP25A2.02c |rhp26||SNF2 family helicase Rhp26|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 973

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 13/38 (34%), Positives = 23/38 (60%)
 Frame = -3

Query: 700 LDQLFALSDISGVLFHRDLLHGALQSEEVLHIEQGTQL 587
           LD +FA + I   L H D++  A Q+E +L  ++ T++
Sbjct: 887 LDDIFASAGIQSTLKHDDIME-ASQTESILVEKEATRV 923


>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3699

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 23/78 (29%), Positives = 29/78 (37%)
 Frame = -1

Query: 738  SLIPSAWTSIMKDSISSLPLAILAAYCFIAIFSTVLSNPKKFFTSSRALSSKHVQSEFSG 559
            S+I SAW  I  +     P+   AAY  IA F +    P K  T       K  Q E   
Sbjct: 1830 SVIMSAWNYIKLED----PMVKQAAYATIACFISAYDTPAKIVTPVYVSILKTYQPEVRA 1885

Query: 558  CT*YLHFSTTPTLVANVS 505
               +   S    L A +S
Sbjct: 1886 FIEFSLASLLSVLTARLS 1903


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 10/31 (32%), Positives = 15/31 (48%)
 Frame = +3

Query: 726 TVSKSSRPGPPVTLTTTGNSEGSSPEELNRC 818
           + S +S P PP + ++TG S    P     C
Sbjct: 309 STSSTSTPPPPASTSSTGTSSSPLPSTSTSC 339


>SPCC895.06 |||RNA polymerase II elongator complex subunit Elp2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 760

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 20/66 (30%), Positives = 26/66 (39%), Gaps = 10/66 (15%)
 Frame = -1

Query: 396 TLSWHRRVVSLWESSEDQLSSVMEQSRTTGI---*GQFGNLLSYAAITISKGY------- 247
           ++ WH     +  SS D    V E    TGI    G+ G + S    T + G        
Sbjct: 273 SVDWHPTKEMILSSSADSSMIVWEPDTNTGIWVVTGRMGEMASSHGSTTATGSAGGFWGG 332

Query: 246 LWTPNG 229
           LW PNG
Sbjct: 333 LWNPNG 338


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,577,032
Number of Sequences: 5004
Number of extensions: 76363
Number of successful extensions: 238
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 223
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 237
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 438479610
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)