Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP07_FL5_F21
(1178 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0686 - 30900748-30902167,30903442-30904742 40 0.005
03_02_0455 - 8630543-8630893,8630994-8631068,8631149-8631223,863... 33 0.44
04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,943... 33 0.58
08_01_0375 - 3307206-3307316,3307870-3307965,3308061-3308132,330... 31 1.3
03_01_0515 - 3864796-3865425 31 2.3
07_03_1136 + 24218601-24218734,24218769-24219906 30 3.1
07_03_1267 + 25318220-25318407,25318674-25318844,25319086-253191... 29 7.1
01_01_0446 + 3321832-3322232,3322398-3322455,3322810-3323748,332... 29 7.1
04_04_1149 + 31273203-31273695,31274016-31275165,31275617-31277078 29 9.4
>02_05_0686 - 30900748-30902167,30903442-30904742
Length = 906
Score = 39.5 bits (88), Expect = 0.005
Identities = 23/56 (41%), Positives = 23/56 (41%)
Frame = +3
Query: 648 AXPPXPXXXGXXPPXXFFFXXXXGRXPXPPXGGXXXXPPPPXGGXFX*KXGXRPPP 815
A PP P G PP G P PP G PPPP GG K G PPP
Sbjct: 334 AAPPPPPPKGPPPPPP-----AKGPPPPPPPKGPSPPPPPPPGGK---KGGPPPPP 381
Score = 29.1 bits (62), Expect = 7.1
Identities = 19/71 (26%), Positives = 19/71 (26%)
Frame = +2
Query: 653 PPXPXXXGGXPPXXXFFXXXXXAAXXPPXGGXXXPPPPPXXGXXXXKXXXXPPXPXXXRX 832
PP P PP A PP PPPPP G P P
Sbjct: 316 PPPPKPAAAAPPPPP-----PPKAAPPPPPPKGPPPPPPAKGPPPPPPPKGPSPPPPPPP 370
Query: 833 XXXXXXXPXPP 865
P PP
Sbjct: 371 GGKKGGPPPPP 381
>03_02_0455 -
8630543-8630893,8630994-8631068,8631149-8631223,
8631332-8631397,8631891-8631967,8632659-8633070
Length = 351
Score = 33.1 bits (72), Expect = 0.44
Identities = 18/70 (25%), Positives = 19/70 (27%)
Frame = +2
Query: 656 PXPXXXGGXPPXXXFFXXXXXAAXXPPXGGXXXPPPPPXXGXXXXKXXXXPPXPXXXRXX 835
P P PP PP GG PPPPP + PP
Sbjct: 273 PPPPPQAPPPPPPNAPMGMPPRIPPPPVGGTQPPPPPPPLANGPPRSIPPPPMTGGAMAN 332
Query: 836 XXXXXXPXPP 865
P PP
Sbjct: 333 FTPGAPPRPP 342
>04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,
9435445-9435526,9435610-9435660,9435749-9435829,
9435965-9436006,9436117-9436215,9438130-9438201,
9438557-9438680,9438850-9439723,9440274-9440456,
9440941-9442741,9442825-9443049,9443117-9443814,
9444519-9444591
Length = 1541
Score = 32.7 bits (71), Expect = 0.58
Identities = 18/57 (31%), Positives = 19/57 (33%), Gaps = 2/57 (3%)
Frame = +2
Query: 653 PPXPXXXG--GXPPXXXFFXXXXXAAXXPPXGGXXXPPPPPXXGXXXXKXXXXPPXP 817
PP P G G P PP G PPPPP G + PP P
Sbjct: 1086 PPLPPTLGDYGVAPPPPSIGAGAPPPPPPPGGITGVPPPPPIGGLGGHQAPPAPPLP 1142
Score = 32.3 bits (70), Expect = 0.77
Identities = 23/82 (28%), Positives = 23/82 (28%), Gaps = 11/82 (13%)
Frame = +2
Query: 653 PPXPXXXGGXPPXXXFFXXXXXAAXXPPXG-----------GXXXPPPPPXXGXXXXKXX 799
PP P GG PP A PP G G PPPPP G
Sbjct: 1139 PPLPEGIGGVPPPPPVGGLGGPPAPPPPAGFRGGTPPPNAHGGVAPPPPPPRGHGGVGGP 1198
Query: 800 XXPPXPXXXRXXXXXXXXPXPP 865
PP P PP
Sbjct: 1199 PTPPGAPAPPMPPGVPGGPPPP 1220
Score = 31.1 bits (67), Expect = 1.8
Identities = 11/18 (61%), Positives = 11/18 (61%)
Frame = +1
Query: 727 PXPXXGGGXPXPPPPXGG 780
P P G G P PPPP GG
Sbjct: 1100 PPPSIGAGAPPPPPPPGG 1117
Score = 30.7 bits (66), Expect = 2.3
Identities = 14/34 (41%), Positives = 14/34 (41%)
Frame = -1
Query: 776 PXGGGGXGXPPPXXGXGXPPXXXXKKKXXGGXXP 675
P G GG PPP G G PP GG P
Sbjct: 1142 PEGIGGVPPPPPVGGLGGPPAPPPPAGFRGGTPP 1175
>08_01_0375 -
3307206-3307316,3307870-3307965,3308061-3308132,
3308247-3308315,3308427-3308513,3308753-3308858,
3309118-3309237,3309327-3309406,3309497-3309878,
3310746-3310814,3311460-3312202
Length = 644
Score = 31.5 bits (68), Expect = 1.3
Identities = 23/78 (29%), Positives = 24/78 (30%), Gaps = 5/78 (6%)
Frame = +3
Query: 654 PPXPXXXGXXPPXXFFFXXXXG-----RXPXPPXGGXXXXPPPPXGGXFX*KXGXRPPPX 818
PP P G PP F G + P PP PPPP G PPP
Sbjct: 54 PPPPPPPGPPPPHQPQFNFGPGPPQQQQPPPPPQMYYQPPPPPPPYGV---NSSQPPPPP 110
Query: 819 XXXXXXXXXXPXPXXPXP 872
P P P P
Sbjct: 111 PPPPSPPPSAPPPPPPPP 128
>03_01_0515 - 3864796-3865425
Length = 209
Score = 30.7 bits (66), Expect = 2.3
Identities = 18/71 (25%), Positives = 20/71 (28%)
Frame = +2
Query: 653 PPXPXXXGGXPPXXXFFXXXXXAAXXPPXGGXXXPPPPPXXGXXXXKXXXXPPXPXXXRX 832
PP P PP ++ PP G PPPPP P P
Sbjct: 39 PPSPPTEASPPPLAP--PPSVTSSPPPPAAGPLMPPPPPPPSVTSSPPPPPLPPPPPPPA 96
Query: 833 XXXXXXXPXPP 865
P PP
Sbjct: 97 ASPPPPPPSPP 107
>07_03_1136 + 24218601-24218734,24218769-24219906
Length = 423
Score = 30.3 bits (65), Expect = 3.1
Identities = 17/46 (36%), Positives = 17/46 (36%), Gaps = 2/46 (4%)
Frame = -1
Query: 779 PPXGGGGXGXP--PPXXGXGXPPXXXXKKKXXGGXXPXXXXXXGXG 648
PP GGGG G P PP G G GG P G G
Sbjct: 108 PPGGGGGGGPPSLPPGAGGGGGARPPAPGGGGGGGAPRRVLGGGGG 153
Score = 29.9 bits (64), Expect = 4.1
Identities = 15/39 (38%), Positives = 15/39 (38%)
Frame = -3
Query: 768 GGGGGXXXPPXGGWXAAXXXXKKKXXXGGXPPXXXGXGG 652
GGGG PP GG A GG P G GG
Sbjct: 152 GGGGALARPPGGGRGGALGRPPGGGGGGGGPGRAPGGGG 190
Score = 29.5 bits (63), Expect = 5.4
Identities = 16/43 (37%), Positives = 16/43 (37%)
Frame = -1
Query: 776 PXGGGGXGXPPPXXGXGXPPXXXXKKKXXGGXXPXXXXXXGXG 648
P GGGG PP G G PP GG P G G
Sbjct: 100 PLGGGG-ARPPGGGGGGGPPSLPPGAGGGGGARPPAPGGGGGG 141
>07_03_1267 +
25318220-25318407,25318674-25318844,25319086-25319188,
25319394-25319885,25320723-25321156,25321333-25321388,
25321711-25321775,25322139-25322147
Length = 505
Score = 29.1 bits (62), Expect = 7.1
Identities = 15/37 (40%), Positives = 15/37 (40%)
Frame = -3
Query: 828 RXXXGXGGXXXFFX*XXPXXGGGGGXXXPPXGGWXAA 718
R G GG GGGGG PP GG AA
Sbjct: 59 RWERGVGGGDAMMHMLVAPDGGGGGEMPPPYGGAAAA 95
>01_01_0446 +
3321832-3322232,3322398-3322455,3322810-3323748,
3324504-3324654,3324740-3324818,3325826-3325934
Length = 578
Score = 29.1 bits (62), Expect = 7.1
Identities = 11/18 (61%), Positives = 11/18 (61%)
Frame = -1
Query: 779 PPXGGGGXGXPPPXXGXG 726
P GGGG G PPP G G
Sbjct: 386 PMPGGGGPGAPPPYHGGG 403
>04_04_1149 + 31273203-31273695,31274016-31275165,31275617-31277078
Length = 1034
Score = 28.7 bits (61), Expect = 9.4
Identities = 21/74 (28%), Positives = 22/74 (29%), Gaps = 1/74 (1%)
Frame = -2
Query: 871 GXGXXGXGXXXXXXXXXXXGGGRXPXFXXXXPPXGGGGXXXXPPXG-GXGXRPXXXXKKX 695
G G G G GGG PP GGGG P G G G +
Sbjct: 17 GGGRGGGGGDGRGGGYGGAGGGGVGGRGGRGPPGGGGGRGYEPGGGRGYGGGGGGGGRGY 76
Query: 694 XXGGXXPXXXGXGG 653
GG GG
Sbjct: 77 GGGGGGGGYESGGG 90
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.314 0.154 0.541
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,000,466
Number of Sequences: 37544
Number of extensions: 480363
Number of successful extensions: 1815
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 808
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1450
length of database: 14,793,348
effective HSP length: 83
effective length of database: 11,677,196
effective search space used: 3608253564
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)
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