Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP07_FL5_F19
(860 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1747 + 29188568-29188715,29188793-29189541 31 1.6
04_04_0959 + 29692740-29693035,29693102-29693267,29693433-296936... 31 1.6
04_01_0159 - 1824343-1824405,1824485-1824595,1825282-1825448,182... 30 2.1
07_03_1136 + 24218601-24218734,24218769-24219906 29 4.8
10_08_0608 + 19184722-19185224,19185331-19185410,19186048-191862... 29 6.3
08_02_0813 + 21459776-21461128 28 8.3
04_01_0530 - 6928528-6929500,6929514-6930964 28 8.3
03_06_0681 - 35512161-35512753,35512882-35513380 28 8.3
03_02_0111 + 5688649-5688942 28 8.3
02_05_0822 + 32025992-32026696,32027237-32027314,32027547-320277... 28 8.3
02_01_0296 + 1978565-1981197,1981216-1981639,1982280-1982771,198... 28 8.3
02_01_0054 - 404464-405152,406087-406618 28 8.3
01_03_0098 + 12538501-12538527,12538930-12539355,12539470-12539892 28 8.3
>07_03_1747 + 29188568-29188715,29188793-29189541
Length = 298
Score = 30.7 bits (66), Expect = 1.6
Identities = 19/51 (37%), Positives = 27/51 (52%)
Frame = +3
Query: 393 PPPGTTLSAPVYLITAPSPG*SAWTLALQFLCS*TIGPTTCRLARSSSVLG 545
PPP TT++ V L TA + S + QF+C+ TTC + S S+ G
Sbjct: 213 PPPTTTMAQHVVLPTAAA---SCHQMQDQFVCARAAETTTCCWSESESLPG 260
>04_04_0959 +
29692740-29693035,29693102-29693267,29693433-29693612,
29693703-29693771,29693888-29694088,29694187-29694240,
29694325-29694386,29694488-29694620,29694789-29694899,
29695008-29695104,29695638-29695714,29696129-29696194,
29696431-29696583,29697392-29697447,29697524-29697584,
29697656-29697766,29698010-29698144,29698217-29698447,
29699001-29699075,29699161-29699282,29699381-29699453,
29699538-29699642,29699728-29699895,29700079-29700148,
29700224-29700375,29700574-29700651,29700744-29700836,
29700961-29701098,29701237-29701276,29701350-29701423,
29701777-29701911,29702345-29702464,29702778-29702939
Length = 1287
Score = 30.7 bits (66), Expect = 1.6
Identities = 23/80 (28%), Positives = 30/80 (37%)
Frame = +3
Query: 99 CGRMRKRNITVPHDRLAPRNVRSGLPPRLQNRSQPDPAFETC*HS*VRVHRANTGRSSNE 278
CG V H L V LP R + A C + +R HR ++ RS
Sbjct: 20 CGLAAVAAGQVRHSPLLRAPVPGLLPERQAPEGRRPLAASRCLPTCLRRHRRSSRRSHRR 79
Query: 279 LDRQTTELERRGSGAAALGW 338
R++ L RR LGW
Sbjct: 80 CRRRSPRLWRRSGSGFLLGW 99
>04_01_0159 -
1824343-1824405,1824485-1824595,1825282-1825448,
1825853-1826029,1826404-1826656
Length = 256
Score = 30.3 bits (65), Expect = 2.1
Identities = 17/50 (34%), Positives = 24/50 (48%)
Frame = -2
Query: 424 TGAESVVPGGGCSRV*QYHVRPPQAFRGHQPSAAAPLPLRSNSVVCRSNS 275
T + S GGCS + PP AFRG+ + P+ + V CR+ S
Sbjct: 59 TASASASASGGCSPAPPWAPSPP-AFRGNVKARYQPVMFNGSIVYCRTPS 107
>07_03_1136 + 24218601-24218734,24218769-24219906
Length = 423
Score = 29.1 bits (62), Expect = 4.8
Identities = 16/42 (38%), Positives = 17/42 (40%), Gaps = 1/42 (2%)
Frame = -3
Query: 834 GKPXXXGGLXGXXXXXPXRXRXXGXPGE-PGXGXPGXXXGGG 712
G+P GG G P G PG PG G G GGG
Sbjct: 170 GRPPGGGGGGGGPGRAPGGGGGGGGPGRAPGGGGGGGGLGGG 211
>10_08_0608 +
19184722-19185224,19185331-19185410,19186048-19186235,
19187021-19187927,19188015-19188142,19189270-19189356,
19189422-19189472,19189582-19189668,19189746-19189873,
19190469-19190608,19190721-19190882,19190964-19192733,
19192807-19192922,19193077-19193227,19193243-19193371,
19193598-19194139
Length = 1722
Score = 28.7 bits (61), Expect = 6.3
Identities = 13/35 (37%), Positives = 13/35 (37%)
Frame = +2
Query: 713 PPPXXXPGXPXPGSPGXPXXLXLXGXXXXXPXKPP 817
PPP P P P P P L G P PP
Sbjct: 27 PPPPPHPPPPPPLEPAPPSTPQLRGEASPPPPPPP 61
>08_02_0813 + 21459776-21461128
Length = 450
Score = 28.3 bits (60), Expect = 8.3
Identities = 19/62 (30%), Positives = 29/62 (46%)
Frame = +2
Query: 308 QGEWGCSTWLVSSERLWRPDVVLLNAAATTAGDYALRARVSNNGSVSWIKRLDISTPISM 487
+G++ C WL + R P LL+ TT R V+ W K+ IS P+S+
Sbjct: 237 RGDYRCPAWLSTDARRLIPR--LLDPNPTT------RISVAQLVETPWFKKTSISRPVSI 288
Query: 488 QL 493
+L
Sbjct: 289 EL 290
>04_01_0530 - 6928528-6929500,6929514-6930964
Length = 807
Score = 28.3 bits (60), Expect = 8.3
Identities = 16/47 (34%), Positives = 27/47 (57%)
Frame = +3
Query: 72 VSPHLCYS*CGRMRKRNITVPHDRLAPRNVRSGLPPRLQNRSQPDPA 212
+SP+LCY+ C RK+ +L+ + SGLPP++ S+ + A
Sbjct: 475 LSPNLCYAFCITSRKKT------QLSQPSNNSGLPPKIFTYSELEKA 515
>03_06_0681 - 35512161-35512753,35512882-35513380
Length = 363
Score = 28.3 bits (60), Expect = 8.3
Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
Frame = -3
Query: 651 WXCXAXDRAVTSHAPXSNILYIPLSITKSISSLLCILEP--NLNVQVCMSLGQLSNCI 484
W C DR H P S I + +S + + SL L+ LN++ C SL L +C+
Sbjct: 236 WNC---DRLEVLHLPPS-IKKLDISCCEELQSLSGKLDAVQELNIESCQSLKSLESCL 289
>03_02_0111 + 5688649-5688942
Length = 97
Score = 28.3 bits (60), Expect = 8.3
Identities = 19/58 (32%), Positives = 26/58 (44%)
Frame = +3
Query: 294 TELERRGSGAAALGWCPRNACGGLTWYC*TRLQPPPGTTLSAPVYLITAPSPG*SAWT 467
T L + AAA G P G + + PPP L+ P+Y + AP SA+T
Sbjct: 28 TALPLTAAAAAATG--PHRRGRGRCYCSASDAPPPPPYVLTTPLYYVNAPPHMGSAYT 83
>02_05_0822 +
32025992-32026696,32027237-32027314,32027547-32027713,
32027811-32027885,32028624-32028742,32028908-32029204,
32029275-32029362,32029467-32029572,32029727-32029837,
32030520-32030683,32031237-32031357,32031958-32032182,
32032267-32032457,32032658-32032825,32032911-32033016,
32033301-32033438,32033533-32033697,32033777-32033980,
32034341-32034535,32034603-32034674,32034797-32034949
Length = 1215
Score = 28.3 bits (60), Expect = 8.3
Identities = 16/30 (53%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Frame = -2
Query: 361 PPQAFR-GHQPSAAAPLPLRSNSVVCRSNS 275
PP+ FR GH P AAAP PLR++ S S
Sbjct: 32 PPEKFRSGHLPRAAAP-PLRTDDGSVASGS 60
>02_01_0296 +
1978565-1981197,1981216-1981639,1982280-1982771,
1982950-1983087
Length = 1228
Score = 28.3 bits (60), Expect = 8.3
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = -1
Query: 422 GRGERSPRRWLQPRLAVPRQASTSVPRTP 336
GRG RS R L+P LA+ A + +P P
Sbjct: 442 GRGPRSTLRILRPGLAISEMARSMLPAEP 470
>02_01_0054 - 404464-405152,406087-406618
Length = 406
Score = 28.3 bits (60), Expect = 8.3
Identities = 26/79 (32%), Positives = 32/79 (40%), Gaps = 7/79 (8%)
Frame = -3
Query: 345 EDTSQVLQPHSPCVPTQSFVDPIHL-------KICLYSHGGLGLTNVSMSQMQGQVDYDF 187
E S + P V + +VDP L K +YS G L L ++ S G D
Sbjct: 260 EGFSAAVAPTRAAVGSPGYVDPFFLRTGIVSKKSDVYSFGVLLLEAITGSPAAGIPGPDG 319
Query: 186 GVGGGVPIVRCEERVDHEG 130
G GGG R RV EG
Sbjct: 320 GAGGGNLTARLLPRVRTEG 338
>01_03_0098 + 12538501-12538527,12538930-12539355,12539470-12539892
Length = 291
Score = 28.3 bits (60), Expect = 8.3
Identities = 19/65 (29%), Positives = 31/65 (47%)
Frame = +2
Query: 305 TQGEWGCSTWLVSSERLWRPDVVLLNAAATTAGDYALRARVSNNGSVSWIKRLDISTPIS 484
T G CS++L R+W +++ + LRA +N S + +D+STP +
Sbjct: 131 TVGRSFCSSFLA---RIWNNTTPIVDTGLSPGYAALLRALCPSNASATATTAIDVSTPAT 187
Query: 485 MQLDN 499
LDN
Sbjct: 188 --LDN 190
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,309,062
Number of Sequences: 37544
Number of extensions: 555358
Number of successful extensions: 1846
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1680
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1823
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2409218220
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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