Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP07_FL5_F18
         (894 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    41   3e-04
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    36   0.010
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    31   0.17 
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    31   0.22 
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S...    27   2.7  
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    27   3.6  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 40.7 bits (91), Expect = 3e-04
 Identities = 16/32 (50%), Positives = 16/32 (50%)
 Frame = -1

Query: 525 PPPPPXXFFFXPPPPXGXXXXWGXXPPPPPPP 430
           P PPP      PPPP       G  PPPPPPP
Sbjct: 750 PVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPP 781



 Score = 38.3 bits (85), Expect = 0.001
 Identities = 16/32 (50%), Positives = 16/32 (50%)
 Frame = -1

Query: 525 PPPPPXXFFFXPPPPXGXXXXWGXXPPPPPPP 430
           PPP P      PPPP       G  PPPPPPP
Sbjct: 752 PPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPP 783



 Score = 31.5 bits (68), Expect = 0.17
 Identities = 15/37 (40%), Positives = 15/37 (40%), Gaps = 5/37 (13%)
 Frame = -1

Query: 525 PPPPPXXFFFXPPPPXGXXXX-----WGXXPPPPPPP 430
           PPPPP       P P            G  PPPPPPP
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPP 768


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 35.5 bits (78), Expect = 0.010
 Identities = 15/32 (46%), Positives = 15/32 (46%)
 Frame = -1

Query: 525 PPPPPXXFFFXPPPPXGXXXXWGXXPPPPPPP 430
           PPPPP        PP G        PPPPPPP
Sbjct: 312 PPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPP 343



 Score = 26.6 bits (56), Expect = 4.8
 Identities = 14/31 (45%), Positives = 14/31 (45%)
 Frame = -3

Query: 523 PPPPXXFFFXSPPPPXXXFXXGXPXPPPPPP 431
           PPPP      S P P      G   PPPPPP
Sbjct: 340 PPPPRSNAAGSIPLPPQ----GRSAPPPPPP 366


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 31.5 bits (68), Expect = 0.17
 Identities = 11/22 (50%), Positives = 12/22 (54%)
 Frame = -3

Query: 490 PPPPXXXFXXGXPXPPPPPPXF 425
           PPPP   F      PPPPPP +
Sbjct: 11  PPPPPPGFEPPSQPPPPPPPGY 32



 Score = 30.7 bits (66), Expect = 0.29
 Identities = 17/36 (47%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
 Frame = -1

Query: 525 PP--PPPXXFFFXPPPPXGXXXXWGXXPPPPPPPXF 424
           PP  PPP      PPPP G        PPPPPPP +
Sbjct: 5   PPGNPPP------PPPPPGFEPP--SQPPPPPPPGY 32


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 31.1 bits (67), Expect = 0.22
 Identities = 14/31 (45%), Positives = 14/31 (45%)
 Frame = -1

Query: 525  PPPPPXXFFFXPPPPXGXXXXWGXXPPPPPP 433
            PPPPP      PPPP       G    PPPP
Sbjct: 1707 PPPPP---MSVPPPPSAPPMPAGPPSAPPPP 1734


>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
           Cap1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 551

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 10/19 (52%), Positives = 10/19 (52%)
 Frame = -1

Query: 486 PPXGXXXXWGXXPPPPPPP 430
           P  G     G  PPPPPPP
Sbjct: 295 PSSGDSANGGLPPPPPPPP 313


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 14/34 (41%), Positives = 15/34 (44%), Gaps = 4/34 (11%)
 Frame = -1

Query: 519 PPPXXFFFXPP----PPXGXXXXWGXXPPPPPPP 430
           PPP    F PP    P       +   PPPPPPP
Sbjct: 167 PPPS---FQPPSAAAPATSLPSDYNPPPPPPPPP 197


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,733,422
Number of Sequences: 5004
Number of extensions: 26133
Number of successful extensions: 235
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 450492750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)