Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP07_FL5_F16
(884 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1747 + 29188568-29188715,29188793-29189541 31 1.6
08_02_0980 + 23255992-23256408,23256480-23256517,23256606-232566... 30 2.8
07_03_0809 - 21669632-21669637,21669871-21670131,21670573-216707... 30 2.8
04_01_0159 - 1824343-1824405,1824485-1824595,1825282-1825448,182... 29 3.8
03_04_0044 + 16754638-16754676,16755472-16755598,16756325-167564... 29 5.0
03_02_0767 - 11009682-11010251 29 5.0
11_06_0411 - 23230580-23230795,23231407-23231862,23232142-232321... 28 8.7
08_02_0813 + 21459776-21461128 28 8.7
05_06_0149 - 25991761-25993181,25993246-25993324 28 8.7
04_03_1027 - 21820843-21820878,21820974-21821117,21821220-218213... 28 8.7
02_05_0822 + 32025992-32026696,32027237-32027314,32027547-320277... 28 8.7
02_01_0296 + 1978565-1981197,1981216-1981639,1982280-1982771,198... 28 8.7
>07_03_1747 + 29188568-29188715,29188793-29189541
Length = 298
Score = 30.7 bits (66), Expect = 1.6
Identities = 19/51 (37%), Positives = 27/51 (52%)
Frame = +3
Query: 378 PPPGTTLSAPVYLITAPSPG*SAWTLALQFLCS*TIGPTTCRLARSSSVLG 530
PPP TT++ V L TA + S + QF+C+ TTC + S S+ G
Sbjct: 213 PPPTTTMAQHVVLPTAAA---SCHQMQDQFVCARAAETTTCCWSESESLPG 260
>08_02_0980 +
23255992-23256408,23256480-23256517,23256606-23256654,
23256787-23256848,23256876-23256938,23256939-23257599
Length = 429
Score = 29.9 bits (64), Expect = 2.8
Identities = 32/119 (26%), Positives = 49/119 (41%), Gaps = 13/119 (10%)
Frame = -1
Query: 386 RRWLQPRLAVPRQASTSVPRTPAKCCSPIPP-----AFQLSRLSIQFI*RSASIRTVDSD 222
RR L V R PR+P + SP PP + R +++ + + SI T D
Sbjct: 282 RRELVTSGRVRRPCLNMRPRSPRRSSSPAPPPSPRRILRRPRPTLELVAGAVSITTQDPP 341
Query: 221 PRMLACLKCRVRLTTILESGGDSR--------SYVARSESIMRDSDVAFSHSAALAIAQ 69
P M C + +L +G R S A E ++ +DV+ S AA +A+
Sbjct: 342 PSMRPCPTLELAGGRVLHAGARRRRPRPPRRSSSSAPPELVVGIADVSSSTLAAPTVAR 400
>07_03_0809 -
21669632-21669637,21669871-21670131,21670573-21670752,
21671458-21672819
Length = 602
Score = 29.9 bits (64), Expect = 2.8
Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Frame = +1
Query: 109 SLSLMIDSLLATYDRESPPDSKIVVNLTLHLRHANIRGSEST-VRILADLQMN 264
+L +D L+ YD+ PPDS+ V HA GSE+T +R+L + +N
Sbjct: 160 NLWTQVDILILRYDK--PPDSRFVQEALAAHAHAT-EGSETTAIRLLEVISLN 209
>04_01_0159 -
1824343-1824405,1824485-1824595,1825282-1825448,
1825853-1826029,1826404-1826656
Length = 256
Score = 29.5 bits (63), Expect = 3.8
Identities = 17/50 (34%), Positives = 23/50 (46%)
Frame = -2
Query: 409 TGAESVVPGGGCSRV*QYHVRPPQAFRGHQPSAAAPFPLRSNSVVCRSNS 260
T + S GGCS + PP AFRG+ + P + V CR+ S
Sbjct: 59 TASASASASGGCSPAPPWAPSPP-AFRGNVKARYQPVMFNGSIVYCRTPS 107
>03_04_0044 +
16754638-16754676,16755472-16755598,16756325-16756451,
16756866-16757431,16757896-16758211,16758373-16758613,
16758734-16758823,16759343-16759780,16759877-16760185,
16760392-16760406
Length = 755
Score = 29.1 bits (62), Expect = 5.0
Identities = 15/38 (39%), Positives = 19/38 (50%)
Frame = -3
Query: 312 LQPHSPCVPTQSFVDPIHLKICQYPHGGLGPTNVSMSQ 199
L PH+ P P HL+ PH GL PT ++M Q
Sbjct: 685 LPPHNGHAPFSPVQHPAHLQFPAMPH-GLQPTTMTMVQ 721
>03_02_0767 - 11009682-11010251
Length = 189
Score = 29.1 bits (62), Expect = 5.0
Identities = 17/40 (42%), Positives = 21/40 (52%)
Frame = +3
Query: 213 HSWVRVHRADTGRSSNELDRQTTELERRGNGAAALGWCPR 332
H W V RA GRSS + R+ EL + +AL W PR
Sbjct: 107 HRWKHVSRAVYGRSSCAVKRRWRELRKSDAFLSAL-WRPR 145
>11_06_0411 -
23230580-23230795,23231407-23231862,23232142-23232195,
23232251-23232367
Length = 280
Score = 28.3 bits (60), Expect = 8.7
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = +3
Query: 222 VRVHRADTGRSSNELDRQTTELERRG 299
V+ H + R S EL+RQ ELER+G
Sbjct: 89 VQRHGEELERQSRELERQREELERQG 114
>08_02_0813 + 21459776-21461128
Length = 450
Score = 28.3 bits (60), Expect = 8.7
Identities = 19/62 (30%), Positives = 29/62 (46%)
Frame = +2
Query: 293 QGEWGCSTWLVSSERLWRPDVVLLNAAATTAGDYALRARVSNNGSVSWIKRLDISTPISM 472
+G++ C WL + R P LL+ TT R V+ W K+ IS P+S+
Sbjct: 237 RGDYRCPAWLSTDARRLIPR--LLDPNPTT------RISVAQLVETPWFKKTSISRPVSI 288
Query: 473 QL 478
+L
Sbjct: 289 EL 290
>05_06_0149 - 25991761-25993181,25993246-25993324
Length = 499
Score = 28.3 bits (60), Expect = 8.7
Identities = 19/65 (29%), Positives = 27/65 (41%), Gaps = 3/65 (4%)
Frame = -1
Query: 380 WLQPRLAVPRQASTSVPRTPAK---CCSPIPPAFQLSRLSIQFI*RSASIRTVDSDPRML 210
WLQP+ A VP P C P+ A + SR+ + R A + +D+ PR
Sbjct: 238 WLQPKALKALAAGVCVPDKPTPRVYCIGPLVDAGRKSRIGGE---RHACLAWLDAQPRRS 294
Query: 209 ACLKC 195
C
Sbjct: 295 VVFLC 299
>04_03_1027 -
21820843-21820878,21820974-21821117,21821220-21821358,
21821522-21821652,21823615-21823670,21823964-21824258
Length = 266
Score = 28.3 bits (60), Expect = 8.7
Identities = 14/47 (29%), Positives = 24/47 (51%)
Frame = -1
Query: 398 ERSPRRWLQPRLAVPRQASTSVPRTPAKCCSPIPPAFQLSRLSIQFI 258
E + R W + RLA+ ++ V R K P+PP L+ L++ +
Sbjct: 47 EAAKRGWSEIRLAIEELSAVDVERRGGKPPPPLPPPPTLTFLALSHL 93
>02_05_0822 +
32025992-32026696,32027237-32027314,32027547-32027713,
32027811-32027885,32028624-32028742,32028908-32029204,
32029275-32029362,32029467-32029572,32029727-32029837,
32030520-32030683,32031237-32031357,32031958-32032182,
32032267-32032457,32032658-32032825,32032911-32033016,
32033301-32033438,32033533-32033697,32033777-32033980,
32034341-32034535,32034603-32034674,32034797-32034949
Length = 1215
Score = 28.3 bits (60), Expect = 8.7
Identities = 16/30 (53%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Frame = -2
Query: 346 PPQAFR-GHQPSAAAPFPLRSNSVVCRSNS 260
PP+ FR GH P AAAP PLR++ S S
Sbjct: 32 PPEKFRSGHLPRAAAP-PLRTDDGSVASGS 60
>02_01_0296 +
1978565-1981197,1981216-1981639,1982280-1982771,
1982950-1983087
Length = 1228
Score = 28.3 bits (60), Expect = 8.7
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = -1
Query: 407 GRGERSPRRWLQPRLAVPRQASTSVPRTP 321
GRG RS R L+P LA+ A + +P P
Sbjct: 442 GRGPRSTLRILRPGLAISEMARSMLPAEP 470
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,841,596
Number of Sequences: 37544
Number of extensions: 493426
Number of successful extensions: 1433
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1379
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1431
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2503236492
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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