Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP07_FL5_F14
         (748 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    29   0.53 
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    29   0.53 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    24   0.63 

>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 29.5 bits (63), Expect = 0.53
 Identities = 10/17 (58%), Positives = 10/17 (58%)
 Frame = -1

Query: 469 PPPPPPXXXKXXXPPPP 419
           PPPPPP       PPPP
Sbjct: 11  PPPPPPGFEPPSQPPPP 27



 Score = 27.1 bits (57), Expect = 2.8
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = -2

Query: 468 PPPPPPXXXKXXXPPPP 418
           PPPPPP   +    PPP
Sbjct: 10  PPPPPPPGFEPPSQPPP 26



 Score = 26.2 bits (55), Expect = 5.0
 Identities = 9/17 (52%), Positives = 9/17 (52%)
 Frame = -3

Query: 470 PPPPPPXXXXKXXXPPP 420
           PPPPPP        PPP
Sbjct: 10  PPPPPPPGFEPPSQPPP 26



 Score = 26.2 bits (55), Expect = 5.0
 Identities = 9/17 (52%), Positives = 9/17 (52%)
 Frame = -3

Query: 470 PPPPPPXXXXKXXXPPP 420
           PPPPPP        PPP
Sbjct: 11  PPPPPPGFEPPSQPPPP 27



 Score = 25.8 bits (54), Expect = 6.6
 Identities = 9/17 (52%), Positives = 9/17 (52%)
 Frame = -1

Query: 469 PPPPPPXXXKXXXPPPP 419
           PPPPP        PPPP
Sbjct: 12  PPPPPGFEPPSQPPPPP 28


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 29.5 bits (63), Expect = 0.53
 Identities = 10/17 (58%), Positives = 10/17 (58%)
 Frame = -2

Query: 468 PPPPPPXXXKXXXPPPP 418
           PPPPPP       PPPP
Sbjct: 762 PPPPPPPGVAGAGPPPP 778



 Score = 29.1 bits (62), Expect = 0.70
 Identities = 10/17 (58%), Positives = 10/17 (58%)
 Frame = -2

Query: 468 PPPPPPXXXKXXXPPPP 418
           PPPPPP       PPPP
Sbjct: 763 PPPPPPGVAGAGPPPPP 779



 Score = 26.2 bits (55), Expect = 5.0
 Identities = 9/17 (52%), Positives = 9/17 (52%)
 Frame = -3

Query: 470 PPPPPPXXXXKXXXPPP 420
           PPPPPP        PPP
Sbjct: 761 PPPPPPPPGVAGAGPPP 777



 Score = 26.2 bits (55), Expect = 5.0
 Identities = 9/17 (52%), Positives = 9/17 (52%)
 Frame = -3

Query: 470 PPPPPPXXXXKXXXPPP 420
           PPPPPP        PPP
Sbjct: 763 PPPPPPGVAGAGPPPPP 779



 Score = 25.8 bits (54), Expect = 6.6
 Identities = 9/17 (52%), Positives = 9/17 (52%)
 Frame = -3

Query: 470 PPPPPPXXXXKXXXPPP 420
           PPPPPP        PPP
Sbjct: 762 PPPPPPPGVAGAGPPPP 778



 Score = 25.8 bits (54), Expect = 6.6
 Identities = 9/17 (52%), Positives = 9/17 (52%)
 Frame = -1

Query: 469 PPPPPPXXXKXXXPPPP 419
           PPPPP        PPPP
Sbjct: 764 PPPPPGVAGAGPPPPPP 780



 Score = 25.4 bits (53), Expect = 8.7
 Identities = 9/17 (52%), Positives = 9/17 (52%)
 Frame = -1

Query: 469 PPPPPPXXXKXXXPPPP 419
           PPPPPP        PPP
Sbjct: 761 PPPPPPPPGVAGAGPPP 777


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 23.8 bits (49), Expect(2) = 1.4
 Identities = 10/30 (33%), Positives = 10/30 (33%)
 Frame = -3

Query: 542 PPPXXXXXXXXXXXXXXGXXXXXXPPPPPP 453
           PPP              G      PPPPPP
Sbjct: 313 PPPPPSRRNRGKPPIGNGSSNSSLPPPPPP 342



 Score = 23.8 bits (49), Expect(2) = 0.63
 Identities = 10/30 (33%), Positives = 10/30 (33%)
 Frame = -1

Query: 541 PPPXXXXXXXXXXXXXXGXXXXXXPPPPPP 452
           PPP              G      PPPPPP
Sbjct: 313 PPPPPSRRNRGKPPIGNGSSNSSLPPPPPP 342



 Score = 23.8 bits (49), Expect(2) = 0.63
 Identities = 9/19 (47%), Positives = 9/19 (47%)
 Frame = -1

Query: 469 PPPPPPXXXKXXXPPPPXL 413
           PPPPPP         PP L
Sbjct: 361 PPPPPPRSAPSTGRQPPPL 379



 Score = 22.6 bits (46), Expect(2) = 1.4
 Identities = 8/17 (47%), Positives = 8/17 (47%)
 Frame = -3

Query: 470 PPPPPPXXXXKXXXPPP 420
           PPPPP         PPP
Sbjct: 362 PPPPPRSAPSTGRQPPP 378


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,575,860
Number of Sequences: 5004
Number of extensions: 22766
Number of successful extensions: 212
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 355273338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)