Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP07_FL5_F13
(848 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1408 - 26353389-26355191 255 3e-68
03_03_0094 + 14378953-14380728 251 6e-67
04_04_0876 - 29005543-29005630,29005841-29006596,29006939-29006955 132 4e-31
02_02_0421 - 10042184-10042197,10042442-10042822,10044158-100442... 103 2e-22
11_06_0293 + 22018128-22018556 97 2e-20
05_01_0060 - 418559-418577,418655-418738,418857-418966,419467-41... 61 9e-10
11_06_0576 - 25127807-25128107,25128241-25128357,25128730-251292... 31 0.88
03_02_0655 + 10220328-10220400,10220686-10220737,10220959-10221301 29 6.2
02_05_0268 - 27302734-27303034,27303114-27303284,27303367-273041... 28 8.2
02_05_0232 + 27041793-27042087,27042822-27042943,27043098-270432... 28 8.2
>07_03_1408 - 26353389-26355191
Length = 600
Score = 255 bits (625), Expect = 3e-68
Identities = 125/200 (62%), Positives = 150/200 (75%), Gaps = 9/200 (4%)
Frame = +3
Query: 189 TLSEKKKKKNKDGVSLGAFQT---------IGDFKIEPSESVKKLDTAYWPLLLKNFDRL 341
T S+KKK K+KD + A + I+P V LDT+ WPLLLKN+DRL
Sbjct: 17 TKSKKKKIKSKDAATAAAVDPPSLAEAEAKTDGYLIKPQSLVPSLDTSTWPLLLKNYDRL 76
Query: 342 NVRTNHYTPLPFGNSPLKRPISDYVKSGFINVDKPSNPSSHEVVSWIKRILKVEKTGHSG 521
NVRT HYTPLP G+SPLKRPI++Y++ G IN+DKPSNPSSHEVV+WIKR+L+V+KTGHSG
Sbjct: 77 NVRTGHYTPLPSGHSPLKRPIAEYLRYGVINLDKPSNPSSHEVVAWIKRLLRVDKTGHSG 136
Query: 522 TLDPKVTGCLIVCIDRATRLVKSQQNAGKEYVAVFNLHSAVXNIQKVTQGLXKLRGALFX 701
TLDPKVTG LIVC+DRATRLVKSQQ AGKEYV V H+AV + +V + L L GA+F
Sbjct: 137 TLDPKVTGNLIVCVDRATRLVKSQQGAGKEYVCVARFHAAVPDTARVARALEALTGAVFQ 196
Query: 702 XXPLISXVKRQLRVRTVYDS 761
PLIS VKRQLRVRT+Y+S
Sbjct: 197 RPPLISAVKRQLRVRTIYES 216
>03_03_0094 + 14378953-14380728
Length = 591
Score = 251 bits (614), Expect = 6e-67
Identities = 116/167 (69%), Positives = 137/167 (82%)
Frame = +3
Query: 261 FKIEPSESVKKLDTAYWPLLLKNFDRLNVRTNHYTPLPFGNSPLKRPISDYVKSGFINVD 440
+ I+P LDT+ WPLLLKN+DRLNVRT HYTPLP G+SPLKRPI++Y++ G IN+D
Sbjct: 54 YLIKPQSVAPPLDTSAWPLLLKNYDRLNVRTGHYTPLPAGHSPLKRPIAEYLRYGVINLD 113
Query: 441 KPSNPSSHEVVSWIKRILKVEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQNAGKEYVA 620
KPSNPSSHEVV+WIKR+L+VEKTGHSGTLDPKVTG LIVC+DRATRLVKSQQ AGKEYV
Sbjct: 114 KPSNPSSHEVVAWIKRLLRVEKTGHSGTLDPKVTGNLIVCVDRATRLVKSQQGAGKEYVC 173
Query: 621 VFNLHSAVXNIQKVTQGLXKLRGALFXXXPLISXVKRQLRVRTVYDS 761
V H+AV + +V + L L GA+F PLIS VKRQLRVRT+Y+S
Sbjct: 174 VARFHAAVPDTARVARALEALTGAVFQRPPLISAVKRQLRVRTIYES 220
>04_04_0876 - 29005543-29005630,29005841-29006596,29006939-29006955
Length = 286
Score = 132 bits (318), Expect = 4e-31
Identities = 66/98 (67%), Positives = 75/98 (76%)
Frame = +3
Query: 468 VVSWIKRILKVEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQNAGKEYVAVFNLHSAVX 647
VV+WIKR+L+V KTGHSGTLDPKVTG LIVC+DRATRLVKSQQ AGKEYV V H+A
Sbjct: 98 VVAWIKRLLRVNKTGHSGTLDPKVTGNLIVCVDRATRLVKSQQGAGKEYVCVARFHAA-- 155
Query: 648 NIQKVTQGLXKLRGALFXXXPLISXVKRQLRVRTVYDS 761
+ L L GA+F PLIS VKRQLRVRT+Y+S
Sbjct: 156 ---DTARALEALTGAMFQRLPLISAVKRQLRVRTIYES 190
>02_02_0421 -
10042184-10042197,10042442-10042822,10044158-10044261,
10044634-10044734,10044806-10045147,10045981-10046158,
10047696-10047776,10049190-10049449
Length = 486
Score = 103 bits (246), Expect = 2e-22
Identities = 47/79 (59%), Positives = 62/79 (78%)
Frame = +3
Query: 381 NSPLKRPISDYVKSGFINVDKPSNPSSHEVVSWIKRILKVEKTGHSGTLDPKVTGCLIVC 560
+SPLK+PI+ ++ G IN++KPSN SHEV++W K +L +EKT H+GTLDPKVTG LIVC
Sbjct: 17 HSPLKQPIAKHLCYGVINLNKPSNLLSHEVITWNKNLLHIEKTSHNGTLDPKVTGNLIVC 76
Query: 561 IDRATRLVKSQQNAGKEYV 617
++RATRLVKS +YV
Sbjct: 77 VNRATRLVKSWNGVMLKYV 95
>11_06_0293 + 22018128-22018556
Length = 142
Score = 97.1 bits (231), Expect = 2e-20
Identities = 45/59 (76%), Positives = 50/59 (84%)
Frame = +3
Query: 468 VVSWIKRILKVEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQNAGKEYVAVFNLHSAV 644
VV+WIKR+L+V KTGHSGTLDPKVTG LIVC+D ATRLVKSQQ AGKEY V H+AV
Sbjct: 59 VVAWIKRLLRVNKTGHSGTLDPKVTGNLIVCVDLATRLVKSQQGAGKEYGCVARFHAAV 117
>05_01_0060 -
418559-418577,418655-418738,418857-418966,419467-419577,
419914-419992,420182-420264,420347-420439,420902-421810
Length = 495
Score = 61.3 bits (142), Expect = 9e-10
Identities = 34/89 (38%), Positives = 49/89 (55%), Gaps = 2/89 (2%)
Frame = +3
Query: 381 NSPLKRPISDYVKSGFINVDKPSNP--SSHEVVSWIKRILKVEKTGHSGTLDPKVTGCLI 554
N+ KR + V +N+ P +S V ++R++ V+K GH+GTLDP TG LI
Sbjct: 291 NARFKRLHQNLVLFMELNICLSCKPGWTSFTVCGKLRRLVNVQKVGHAGTLDPMATGLLI 350
Query: 555 VCIDRATRLVKSQQNAGKEYVAVFNLHSA 641
VC+ +AT++V Q K Y VF L A
Sbjct: 351 VCVGKATKVVDRYQGMVKGYSGVFRLGEA 379
>11_06_0576 -
25127807-25128107,25128241-25128357,25128730-25129271,
25129353-25129814,25129893-25130626,25130715-25130742
Length = 727
Score = 31.5 bits (68), Expect = 0.88
Identities = 29/111 (26%), Positives = 43/111 (38%), Gaps = 2/111 (1%)
Frame = +2
Query: 422 WLHQRRQTEQPQLPRSSFMDKTYFKSRKDWSFGHARS-ESYGLPYRLHRPRHETRQITTE 598
W + P + K + K K W G ++ + P+ H P E QIT
Sbjct: 95 WTAMEKWFTFPAEAKDRLKRKAFQKMGKAWKNGKSKLFTEFVNPHGNHTPFDEYPQITEA 154
Query: 599 RWQRVCSRFQLAFSRXEYSKSHTGLGXAAWSSIPXXPA-YIGREATTACQD 748
W+ CS ++ E S++H L A YIG+EA A +D
Sbjct: 155 VWEEFCS-LKITQEFRESSEAHRLLQQRNEHLHRLGTAGYIGKEAIWAQED 204
>03_02_0655 + 10220328-10220400,10220686-10220737,10220959-10221301
Length = 155
Score = 28.7 bits (61), Expect = 6.2
Identities = 22/76 (28%), Positives = 32/76 (42%), Gaps = 2/76 (2%)
Frame = +3
Query: 375 FGNSPLKRPISDYVKSGFI--NVDKPSNPSSHEVVSWIKRILKVEKTGHSGTLDPKVTGC 548
F + P R I D V +G NV NP + W KR L+ +K G + C
Sbjct: 51 FKDYPFTREIWDKVTAGMEQNNVLPVYNPDERLIDWWEKRTLQQDKNQTEGMRSLHMLLC 110
Query: 549 LIVCIDRATRLVKSQQ 596
V +R R+ K ++
Sbjct: 111 WEVWCERNRRIFKGKE 126
>02_05_0268 -
27302734-27303034,27303114-27303284,27303367-27304199,
27304281-27304742,27304821-27305554,27305643-27305772
Length = 876
Score = 28.3 bits (60), Expect = 8.2
Identities = 29/111 (26%), Positives = 40/111 (36%), Gaps = 2/111 (1%)
Frame = +2
Query: 422 WLHQRRQTEQPQLPRSSFMDKTYFKSRKDWSFGHARS-ESYGLPYRLHRPRHETRQITTE 598
W + P + K + K K W ++ Y P H P E QIT
Sbjct: 129 WTAMEKWFTFPAEAKDRLKRKAFQKMGKAWKNWKSKLFTEYVNPPGNHTPFDEYHQITEA 188
Query: 599 RWQRVCSRFQLAFSRXEYSKSHTGLGXAAWSSIPXXPA-YIGREATTACQD 748
W+ CS + E S++H L A YIG+EA A +D
Sbjct: 189 VWEEFCS-LKTTQEFRESSEAHRVLQQRNEHPHRLGTAGYIGKEAIWAQED 238
>02_05_0232 + 27041793-27042087,27042822-27042943,27043098-27043219,
27043601-27043705,27043828-27044257,27044356-27044517,
27044565-27045260,27045349-27046128,27046441-27046654,
27047621-27047981,27047993-27048140,27048276-27048419,
27048784-27048888,27049749-27049794,27050089-27050255,
27050338-27050490,27050654-27050950,27051053-27051220,
27051298-27051363,27051451-27051927,27052031-27052768,
27052935-27053120
Length = 1993
Score = 28.3 bits (60), Expect = 8.2
Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Frame = +3
Query: 195 SEKKKKKNKDGVSLGAFQTIGDFK-IEPSESVKKLDTA 305
SEK ++ N+DG S+ A I DF E ++ + DTA
Sbjct: 1609 SEKLRQMNRDGASMIATTQIADFSFFELRQATQDFDTA 1646
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,712,817
Number of Sequences: 37544
Number of extensions: 470463
Number of successful extensions: 1179
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1177
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2362209084
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -