Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP07_FL5_F13
(848 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC010015-1|AAH10015.1| 514|Homo sapiens dyskeratosis congenita ... 264 4e-70
BC009928-1|AAH09928.1| 514|Homo sapiens dyskeratosis congenita ... 264 4e-70
AJ224481-1|CAA11970.1| 514|Homo sapiens dyskerin protein. 264 4e-70
AJ010395-1|CAB51168.1| 524|Homo sapiens dyskerin protein. 264 4e-70
AF067023-1|AAD20232.1| 514|Homo sapiens dyskerin protein. 264 4e-70
AF067008-1|AAD11815.1| 514|Homo sapiens dyskerin protein. 264 4e-70
U59151-1|AAB94299.1| 514|Homo sapiens Cbf5p homolog protein. 263 5e-70
BC030601-1|AAH30601.1| 349|Homo sapiens TruB pseudouridine (psi... 44 7e-04
AL355340-1|CAH73219.1| 349|Homo sapiens TruB pseudouridine (psi... 44 7e-04
AK223567-1|BAD97287.1| 349|Homo sapiens TruB pseudouridine (psi... 44 7e-04
AF448144-1|AAL40350.1| 349|Homo sapiens TruB pseudouridine synt... 44 7e-04
>BC010015-1|AAH10015.1| 514|Homo sapiens dyskeratosis congenita 1,
dyskerin protein.
Length = 514
Score = 264 bits (646), Expect = 4e-70
Identities = 121/188 (64%), Positives = 151/188 (80%)
Frame = +3
Query: 198 EKKKKKNKDGVSLGAFQTIGDFKIEPSESVKKLDTAYWPLLLKNFDRLNVRTNHYTPLPF 377
+KK++K+ + Q +F I+P V KLDT+ WPLLLKNFD+LNVRT HYTPL
Sbjct: 15 KKKERKSLPEEDVAEIQHAEEFLIKPESKVAKLDTSQWPLLLKNFDKLNVRTTHYTPLAC 74
Query: 378 GNSPLKRPISDYVKSGFINVDKPSNPSSHEVVSWIKRILKVEKTGHSGTLDPKVTGCLIV 557
G++PLKR I DY+++GFIN+DKPSNPSSHEVV+WI+RIL+VEKTGHSGTLDPKVTGCLIV
Sbjct: 75 GSNPLKREIGDYIRTGFINLDKPSNPSSHEVVAWIRRILRVEKTGHSGTLDPKVTGCLIV 134
Query: 558 CIDRATRLVKSQQNAGKEYVAVFNLHSAVXNIQKVTQGLXKLRGALFXXXPLISXVKRQL 737
CI+RATRLVKSQQ+AGKEYV + LH+A+ ++++ L L GALF PLI+ VKRQL
Sbjct: 135 CIERATRLVKSQQSAGKEYVGIVRLHNAIEGGTQLSRALETLTGALFQRPPLIAAVKRQL 194
Query: 738 RVRTVYDS 761
RVRT+Y+S
Sbjct: 195 RVRTIYES 202
>BC009928-1|AAH09928.1| 514|Homo sapiens dyskeratosis congenita 1,
dyskerin protein.
Length = 514
Score = 264 bits (646), Expect = 4e-70
Identities = 121/188 (64%), Positives = 151/188 (80%)
Frame = +3
Query: 198 EKKKKKNKDGVSLGAFQTIGDFKIEPSESVKKLDTAYWPLLLKNFDRLNVRTNHYTPLPF 377
+KK++K+ + Q +F I+P V KLDT+ WPLLLKNFD+LNVRT HYTPL
Sbjct: 15 KKKERKSLPEEDVAEIQHAEEFLIKPESKVAKLDTSQWPLLLKNFDKLNVRTTHYTPLAC 74
Query: 378 GNSPLKRPISDYVKSGFINVDKPSNPSSHEVVSWIKRILKVEKTGHSGTLDPKVTGCLIV 557
G++PLKR I DY+++GFIN+DKPSNPSSHEVV+WI+RIL+VEKTGHSGTLDPKVTGCLIV
Sbjct: 75 GSNPLKREIGDYIRTGFINLDKPSNPSSHEVVAWIRRILRVEKTGHSGTLDPKVTGCLIV 134
Query: 558 CIDRATRLVKSQQNAGKEYVAVFNLHSAVXNIQKVTQGLXKLRGALFXXXPLISXVKRQL 737
CI+RATRLVKSQQ+AGKEYV + LH+A+ ++++ L L GALF PLI+ VKRQL
Sbjct: 135 CIERATRLVKSQQSAGKEYVGIVRLHNAIEGGTQLSRALETLTGALFQRPPLIAAVKRQL 194
Query: 738 RVRTVYDS 761
RVRT+Y+S
Sbjct: 195 RVRTIYES 202
>AJ224481-1|CAA11970.1| 514|Homo sapiens dyskerin protein.
Length = 514
Score = 264 bits (646), Expect = 4e-70
Identities = 121/188 (64%), Positives = 151/188 (80%)
Frame = +3
Query: 198 EKKKKKNKDGVSLGAFQTIGDFKIEPSESVKKLDTAYWPLLLKNFDRLNVRTNHYTPLPF 377
+KK++K+ + Q +F I+P V KLDT+ WPLLLKNFD+LNVRT HYTPL
Sbjct: 15 KKKERKSLPEEDVAEIQHAEEFLIKPESKVAKLDTSQWPLLLKNFDKLNVRTTHYTPLAC 74
Query: 378 GNSPLKRPISDYVKSGFINVDKPSNPSSHEVVSWIKRILKVEKTGHSGTLDPKVTGCLIV 557
G++PLKR I DY+++GFIN+DKPSNPSSHEVV+WI+RIL+VEKTGHSGTLDPKVTGCLIV
Sbjct: 75 GSNPLKREIGDYIRTGFINLDKPSNPSSHEVVAWIRRILRVEKTGHSGTLDPKVTGCLIV 134
Query: 558 CIDRATRLVKSQQNAGKEYVAVFNLHSAVXNIQKVTQGLXKLRGALFXXXPLISXVKRQL 737
CI+RATRLVKSQQ+AGKEYV + LH+A+ ++++ L L GALF PLI+ VKRQL
Sbjct: 135 CIERATRLVKSQQSAGKEYVGIVRLHNAIEGGTQLSRALETLTGALFQRPPLIAAVKRQL 194
Query: 738 RVRTVYDS 761
RVRT+Y+S
Sbjct: 195 RVRTIYES 202
>AJ010395-1|CAB51168.1| 524|Homo sapiens dyskerin protein.
Length = 524
Score = 264 bits (646), Expect = 4e-70
Identities = 121/188 (64%), Positives = 151/188 (80%)
Frame = +3
Query: 198 EKKKKKNKDGVSLGAFQTIGDFKIEPSESVKKLDTAYWPLLLKNFDRLNVRTNHYTPLPF 377
+KK++K+ + Q +F I+P V KLDT+ WPLLLKNFD+LNVRT HYTPL
Sbjct: 15 KKKERKSLPEEDVAEIQHAEEFLIKPESKVAKLDTSQWPLLLKNFDKLNVRTTHYTPLAC 74
Query: 378 GNSPLKRPISDYVKSGFINVDKPSNPSSHEVVSWIKRILKVEKTGHSGTLDPKVTGCLIV 557
G++PLKR I DY+++GFIN+DKPSNPSSHEVV+WI+RIL+VEKTGHSGTLDPKVTGCLIV
Sbjct: 75 GSNPLKREIGDYIRTGFINLDKPSNPSSHEVVAWIRRILRVEKTGHSGTLDPKVTGCLIV 134
Query: 558 CIDRATRLVKSQQNAGKEYVAVFNLHSAVXNIQKVTQGLXKLRGALFXXXPLISXVKRQL 737
CI+RATRLVKSQQ+AGKEYV + LH+A+ ++++ L L GALF PLI+ VKRQL
Sbjct: 135 CIERATRLVKSQQSAGKEYVGIVRLHNAIEGGTQLSRALETLTGALFQRPPLIAAVKRQL 194
Query: 738 RVRTVYDS 761
RVRT+Y+S
Sbjct: 195 RVRTIYES 202
>AF067023-1|AAD20232.1| 514|Homo sapiens dyskerin protein.
Length = 514
Score = 264 bits (646), Expect = 4e-70
Identities = 121/188 (64%), Positives = 151/188 (80%)
Frame = +3
Query: 198 EKKKKKNKDGVSLGAFQTIGDFKIEPSESVKKLDTAYWPLLLKNFDRLNVRTNHYTPLPF 377
+KK++K+ + Q +F I+P V KLDT+ WPLLLKNFD+LNVRT HYTPL
Sbjct: 15 KKKERKSLPEEDVAEIQHAEEFLIKPESKVAKLDTSQWPLLLKNFDKLNVRTTHYTPLAC 74
Query: 378 GNSPLKRPISDYVKSGFINVDKPSNPSSHEVVSWIKRILKVEKTGHSGTLDPKVTGCLIV 557
G++PLKR I DY+++GFIN+DKPSNPSSHEVV+WI+RIL+VEKTGHSGTLDPKVTGCLIV
Sbjct: 75 GSNPLKREIGDYIRTGFINLDKPSNPSSHEVVAWIRRILRVEKTGHSGTLDPKVTGCLIV 134
Query: 558 CIDRATRLVKSQQNAGKEYVAVFNLHSAVXNIQKVTQGLXKLRGALFXXXPLISXVKRQL 737
CI+RATRLVKSQQ+AGKEYV + LH+A+ ++++ L L GALF PLI+ VKRQL
Sbjct: 135 CIERATRLVKSQQSAGKEYVGIVRLHNAIEGGTQLSRALETLTGALFQRPPLIAAVKRQL 194
Query: 738 RVRTVYDS 761
RVRT+Y+S
Sbjct: 195 RVRTIYES 202
>AF067008-1|AAD11815.1| 514|Homo sapiens dyskerin protein.
Length = 514
Score = 264 bits (646), Expect = 4e-70
Identities = 121/188 (64%), Positives = 151/188 (80%)
Frame = +3
Query: 198 EKKKKKNKDGVSLGAFQTIGDFKIEPSESVKKLDTAYWPLLLKNFDRLNVRTNHYTPLPF 377
+KK++K+ + Q +F I+P V KLDT+ WPLLLKNFD+LNVRT HYTPL
Sbjct: 15 KKKERKSLPEEDVAEIQHAEEFLIKPESKVAKLDTSQWPLLLKNFDKLNVRTTHYTPLAC 74
Query: 378 GNSPLKRPISDYVKSGFINVDKPSNPSSHEVVSWIKRILKVEKTGHSGTLDPKVTGCLIV 557
G++PLKR I DY+++GFIN+DKPSNPSSHEVV+WI+RIL+VEKTGHSGTLDPKVTGCLIV
Sbjct: 75 GSNPLKREIGDYIRTGFINLDKPSNPSSHEVVAWIRRILRVEKTGHSGTLDPKVTGCLIV 134
Query: 558 CIDRATRLVKSQQNAGKEYVAVFNLHSAVXNIQKVTQGLXKLRGALFXXXPLISXVKRQL 737
CI+RATRLVKSQQ+AGKEYV + LH+A+ ++++ L L GALF PLI+ VKRQL
Sbjct: 135 CIERATRLVKSQQSAGKEYVGIVRLHNAIEGGTQLSRALETLTGALFQRPPLIAAVKRQL 194
Query: 738 RVRTVYDS 761
RVRT+Y+S
Sbjct: 195 RVRTIYES 202
>U59151-1|AAB94299.1| 514|Homo sapiens Cbf5p homolog protein.
Length = 514
Score = 263 bits (645), Expect = 5e-70
Identities = 121/188 (64%), Positives = 151/188 (80%)
Frame = +3
Query: 198 EKKKKKNKDGVSLGAFQTIGDFKIEPSESVKKLDTAYWPLLLKNFDRLNVRTNHYTPLPF 377
+KK++K+ + Q +F I+P V KLDT+ WPLLLKNFD+LNVRT HYTPL
Sbjct: 15 KKKERKSLPEEDVAEIQHAEEFFIKPESKVAKLDTSQWPLLLKNFDKLNVRTTHYTPLAC 74
Query: 378 GNSPLKRPISDYVKSGFINVDKPSNPSSHEVVSWIKRILKVEKTGHSGTLDPKVTGCLIV 557
G++PLKR I DY+++GFIN+DKPSNPSSHEVV+WI+RIL+VEKTGHSGTLDPKVTGCLIV
Sbjct: 75 GSNPLKREIGDYIRTGFINLDKPSNPSSHEVVAWIRRILRVEKTGHSGTLDPKVTGCLIV 134
Query: 558 CIDRATRLVKSQQNAGKEYVAVFNLHSAVXNIQKVTQGLXKLRGALFXXXPLISXVKRQL 737
CI+RATRLVKSQQ+AGKEYV + LH+A+ ++++ L L GALF PLI+ VKRQL
Sbjct: 135 CIERATRLVKSQQSAGKEYVGIVRLHNAIEGGTQLSRALETLTGALFQRPPLIAAVKRQL 194
Query: 738 RVRTVYDS 761
RVRT+Y+S
Sbjct: 195 RVRTIYES 202
>BC030601-1|AAH30601.1| 349|Homo sapiens TruB pseudouridine (psi)
synthase homolog 1 (E. coli) protein.
Length = 349
Score = 44.0 bits (99), Expect = 7e-04
Identities = 21/59 (35%), Positives = 29/59 (49%)
Frame = +3
Query: 477 WIKRILKVEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQNAGKEYVAVFNLHSAVXNI 653
W KR + K GH GTLD G L+V I T+++ S + K Y A+ L A +
Sbjct: 104 WTKRKKQTLKIGHGGTLDSAARGVLVVGIGSGTKMLTSMLSGSKRYTAIGELGKATDTL 162
>AL355340-1|CAH73219.1| 349|Homo sapiens TruB pseudouridine (psi)
synthase homolog 1 (E. coli) protein.
Length = 349
Score = 44.0 bits (99), Expect = 7e-04
Identities = 21/59 (35%), Positives = 29/59 (49%)
Frame = +3
Query: 477 WIKRILKVEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQNAGKEYVAVFNLHSAVXNI 653
W KR + K GH GTLD G L+V I T+++ S + K Y A+ L A +
Sbjct: 104 WTKRKKQTLKIGHGGTLDSAARGVLVVGIGSGTKMLTSMLSGSKRYTAIGELGKATDTL 162
>AK223567-1|BAD97287.1| 349|Homo sapiens TruB pseudouridine (psi)
synthase homolog 1 variant protein.
Length = 349
Score = 44.0 bits (99), Expect = 7e-04
Identities = 21/59 (35%), Positives = 29/59 (49%)
Frame = +3
Query: 477 WIKRILKVEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQNAGKEYVAVFNLHSAVXNI 653
W KR + K GH GTLD G L+V I T+++ S + K Y A+ L A +
Sbjct: 104 WTKRKKQTLKIGHGGTLDSAARGVLVVGIGSGTKMLTSMLSGSKRYTAIGELGKATDTL 162
>AF448144-1|AAL40350.1| 349|Homo sapiens TruB pseudouridine
synthase-like protein 1 protein.
Length = 349
Score = 44.0 bits (99), Expect = 7e-04
Identities = 21/59 (35%), Positives = 29/59 (49%)
Frame = +3
Query: 477 WIKRILKVEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQNAGKEYVAVFNLHSAVXNI 653
W KR + K GH GTLD G L+V I T+++ S + K Y A+ L A +
Sbjct: 104 WTKRKKQTLKIGHGGTLDSAARGVLVVGIGSGTKMLTSMLSGSKRYTAIGELGKATDTL 162
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 121,274,889
Number of Sequences: 237096
Number of extensions: 2578574
Number of successful extensions: 5731
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 5489
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5715
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 10761200974
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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