Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP07_FL5_F12
(1169 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF003151-19|AAK18922.1| 988|Caenorhabditis elegans Hypothetical... 35 0.096
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 33 0.29
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 33 0.29
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 33 0.29
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 33 0.51
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 33 0.51
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 33 0.51
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 30 3.6
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 30 3.6
Z68338-7|CAA92756.2| 866|Caenorhabditis elegans Hypothetical pr... 29 4.8
AL110485-8|CAB60356.1| 434|Caenorhabditis elegans Hypothetical ... 29 4.8
AL117204-20|CAB55136.2| 699|Caenorhabditis elegans Hypothetical... 29 6.3
AJ243905-1|CAB64866.1| 699|Caenorhabditis elegans SF1 protein p... 29 6.3
>AF003151-19|AAK18922.1| 988|Caenorhabditis elegans Hypothetical
protein D1007.7 protein.
Length = 988
Score = 35.1 bits (77), Expect = 0.096
Identities = 22/59 (37%), Positives = 25/59 (42%), Gaps = 8/59 (13%)
Frame = -1
Query: 833 PPPXFXXGGGXVFXFXXXPXXGGXGXXPPPP--------XGXPPPXXXXKKKXXGGXPP 681
PPP F G G + F P GG PPPP G PPP ++ GG PP
Sbjct: 756 PPPPFGRGAGPMSSF-PPPPRGGMHHMPPPPSFRGGRGGHGGPPPPHFDRR--GGGGPP 811
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 33.5 bits (73), Expect = 0.29
Identities = 19/51 (37%), Positives = 19/51 (37%)
Frame = -1
Query: 833 PPPXFXXGGGXVFXFXXXPXXGGXGXXPPPPXGXPPPXXXXKKKXXGGXPP 681
PPP GG P GG PPPP G PPP G PP
Sbjct: 742 PPPPPPPGG-------LPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGGPP 785
Score = 30.7 bits (66), Expect = 2.1
Identities = 14/35 (40%), Positives = 14/35 (40%)
Frame = +1
Query: 727 GGXPXGGGGXXPXPPXXGFXKXKKTXPPPXXKXGG 831
GG P GG P PP G PPP GG
Sbjct: 733 GGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGG 767
Score = 29.9 bits (64), Expect = 3.6
Identities = 14/35 (40%), Positives = 14/35 (40%)
Frame = +1
Query: 727 GGXPXGGGGXXPXPPXXGFXKXKKTXPPPXXKXGG 831
GG P GG P PP G PPP GG
Sbjct: 749 GGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGG 783
Score = 28.7 bits (61), Expect = 8.4
Identities = 19/52 (36%), Positives = 20/52 (38%)
Frame = -1
Query: 836 PPPPXFXXGGGXVFXFXXXPXXGGXGXXPPPPXGXPPPXXXXKKKXXGGXPP 681
PPPP G + P G PPPP PPP K GG PP
Sbjct: 742 PPPPPPPGGLPPISGGPPPPPPPPGGCPPPPP---PPPPGGFK----GGPPP 786
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 33.5 bits (73), Expect = 0.29
Identities = 19/51 (37%), Positives = 19/51 (37%)
Frame = -1
Query: 833 PPPXFXXGGGXVFXFXXXPXXGGXGXXPPPPXGXPPPXXXXKKKXXGGXPP 681
PPP GG P GG PPPP G PPP G PP
Sbjct: 742 PPPPPPPGG-------LPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGGPP 785
Score = 30.7 bits (66), Expect = 2.1
Identities = 14/35 (40%), Positives = 14/35 (40%)
Frame = +1
Query: 727 GGXPXGGGGXXPXPPXXGFXKXKKTXPPPXXKXGG 831
GG P GG P PP G PPP GG
Sbjct: 733 GGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGG 767
Score = 29.9 bits (64), Expect = 3.6
Identities = 14/35 (40%), Positives = 14/35 (40%)
Frame = +1
Query: 727 GGXPXGGGGXXPXPPXXGFXKXKKTXPPPXXKXGG 831
GG P GG P PP G PPP GG
Sbjct: 749 GGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGG 783
Score = 28.7 bits (61), Expect = 8.4
Identities = 19/52 (36%), Positives = 20/52 (38%)
Frame = -1
Query: 836 PPPPXFXXGGGXVFXFXXXPXXGGXGXXPPPPXGXPPPXXXXKKKXXGGXPP 681
PPPP G + P G PPPP PPP K GG PP
Sbjct: 742 PPPPPPPGGLPPISGGPPPPPPPPGGCPPPPP---PPPPGGFK----GGPPP 786
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 33.5 bits (73), Expect = 0.29
Identities = 19/51 (37%), Positives = 19/51 (37%)
Frame = -1
Query: 833 PPPXFXXGGGXVFXFXXXPXXGGXGXXPPPPXGXPPPXXXXKKKXXGGXPP 681
PPP GG P GG PPPP G PPP G PP
Sbjct: 325 PPPPPPPGG-------LPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGGPP 368
Score = 30.7 bits (66), Expect = 2.1
Identities = 14/35 (40%), Positives = 14/35 (40%)
Frame = +1
Query: 727 GGXPXGGGGXXPXPPXXGFXKXKKTXPPPXXKXGG 831
GG P GG P PP G PPP GG
Sbjct: 316 GGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGG 350
Score = 29.9 bits (64), Expect = 3.6
Identities = 14/35 (40%), Positives = 14/35 (40%)
Frame = +1
Query: 727 GGXPXGGGGXXPXPPXXGFXKXKKTXPPPXXKXGG 831
GG P GG P PP G PPP GG
Sbjct: 332 GGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGG 366
Score = 28.7 bits (61), Expect = 8.4
Identities = 19/52 (36%), Positives = 20/52 (38%)
Frame = -1
Query: 836 PPPPXFXXGGGXVFXFXXXPXXGGXGXXPPPPXGXPPPXXXXKKKXXGGXPP 681
PPPP G + P G PPPP PPP K GG PP
Sbjct: 325 PPPPPPPGGLPPISGGPPPPPPPPGGCPPPPP---PPPPGGFK----GGPPP 369
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 32.7 bits (71), Expect = 0.51
Identities = 18/54 (33%), Positives = 19/54 (35%), Gaps = 2/54 (3%)
Frame = -1
Query: 836 PPPPXFXXGGGXVFXFXXXPXXGGXGXXPPPPXGXPPPXXXXK--KKXXGGXPP 681
PPPP G + P G PPP G PPP GG PP
Sbjct: 237 PPPPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPP 290
Score = 31.5 bits (68), Expect = 1.2
Identities = 16/52 (30%), Positives = 17/52 (32%)
Frame = -1
Query: 836 PPPPXFXXGGGXVFXFXXXPXXGGXGXXPPPPXGXPPPXXXXKKKXXGGXPP 681
PPPP P G PPPP G PP + G PP
Sbjct: 272 PPPPPTGSPPPPPAGGSPPPPRAGSPPPPPPPRGSPPTGSLPPPQAGGSPPP 323
Score = 28.7 bits (61), Expect = 8.4
Identities = 15/56 (26%), Positives = 16/56 (28%)
Frame = +1
Query: 727 GGXPXGGGGXXPXPPXXGFXKXKKTXPPPXXKXGGGGXXXXXXXXXXXXXXXXPPP 894
G P G G P PP G +T PP G PPP
Sbjct: 245 GSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPPPP 300
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 32.7 bits (71), Expect = 0.51
Identities = 18/54 (33%), Positives = 19/54 (35%), Gaps = 2/54 (3%)
Frame = -1
Query: 836 PPPPXFXXGGGXVFXFXXXPXXGGXGXXPPPPXGXPPPXXXXK--KKXXGGXPP 681
PPPP G + P G PPP G PPP GG PP
Sbjct: 258 PPPPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPP 311
Score = 31.5 bits (68), Expect = 1.2
Identities = 16/52 (30%), Positives = 17/52 (32%)
Frame = -1
Query: 836 PPPPXFXXGGGXVFXFXXXPXXGGXGXXPPPPXGXPPPXXXXKKKXXGGXPP 681
PPPP P G PPPP G PP + G PP
Sbjct: 293 PPPPPTGSPPPPPAGGSPPPPRAGSPPPPPPPRGSPPTGSLPPPQAGGSPPP 344
Score = 28.7 bits (61), Expect = 8.4
Identities = 15/56 (26%), Positives = 16/56 (28%)
Frame = +1
Query: 727 GGXPXGGGGXXPXPPXXGFXKXKKTXPPPXXKXGGGGXXXXXXXXXXXXXXXXPPP 894
G P G G P PP G +T PP G PPP
Sbjct: 266 GSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPPPP 321
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 32.7 bits (71), Expect = 0.51
Identities = 18/54 (33%), Positives = 19/54 (35%), Gaps = 2/54 (3%)
Frame = -1
Query: 836 PPPPXFXXGGGXVFXFXXXPXXGGXGXXPPPPXGXPPPXXXXK--KKXXGGXPP 681
PPPP G + P G PPP G PPP GG PP
Sbjct: 243 PPPPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPP 296
Score = 31.5 bits (68), Expect = 1.2
Identities = 16/52 (30%), Positives = 17/52 (32%)
Frame = -1
Query: 836 PPPPXFXXGGGXVFXFXXXPXXGGXGXXPPPPXGXPPPXXXXKKKXXGGXPP 681
PPPP P G PPPP G PP + G PP
Sbjct: 278 PPPPPTGSPPPPPAGGSPPPPRAGSPPPPPPPRGSPPTGSLPPPQAGGSPPP 329
Score = 28.7 bits (61), Expect = 8.4
Identities = 15/56 (26%), Positives = 16/56 (28%)
Frame = +1
Query: 727 GGXPXGGGGXXPXPPXXGFXKXKKTXPPPXXKXGGGGXXXXXXXXXXXXXXXXPPP 894
G P G G P PP G +T PP G PPP
Sbjct: 251 GSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPPPP 306
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 29.9 bits (64), Expect = 3.6
Identities = 14/37 (37%), Positives = 14/37 (37%)
Frame = -1
Query: 836 PPPPXFXXGGGXVFXFXXXPXXGGXGXXPPPPXGXPP 726
PPPP GG G G PPPP PP
Sbjct: 336 PPPPGMRYPGGMPPPPPPRYPSAGPGMYPPPPPSRPP 372
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 29.9 bits (64), Expect = 3.6
Identities = 14/37 (37%), Positives = 14/37 (37%)
Frame = -1
Query: 836 PPPPXFXXGGGXVFXFXXXPXXGGXGXXPPPPXGXPP 726
PPPP GG G G PPPP PP
Sbjct: 346 PPPPGMRYPGGMPPPPPPRYPSAGPGMYPPPPPSRPP 382
>Z68338-7|CAA92756.2| 866|Caenorhabditis elegans Hypothetical
protein T24B8.4 protein.
Length = 866
Score = 29.5 bits (63), Expect = 4.8
Identities = 17/53 (32%), Positives = 18/53 (33%)
Frame = -1
Query: 836 PPPPXFXXGGGXVFXFXXXPXXGGXGXXPPPPXGXPPPXXXXKKKXXGGXPPK 678
PPPP GG P G PPP G PPP PP+
Sbjct: 84 PPPPPMFAGG-----IPPPPPMMGGIPPPPPMFGAPPPPPPPSGLGVAPQPPR 131
>AL110485-8|CAB60356.1| 434|Caenorhabditis elegans Hypothetical
protein Y46G5A.13 protein.
Length = 434
Score = 29.5 bits (63), Expect = 4.8
Identities = 14/30 (46%), Positives = 17/30 (56%)
Frame = -1
Query: 452 SKKXXGGAGGV*NXXFFLGNSRGGGXSFPP 363
S++ GG GG N + GNS GGG S P
Sbjct: 334 SERGSGGGGGSGNYGYGYGNSGGGGGSGGP 363
>AL117204-20|CAB55136.2| 699|Caenorhabditis elegans Hypothetical
protein Y116A8C.32 protein.
Length = 699
Score = 29.1 bits (62), Expect = 6.3
Identities = 15/47 (31%), Positives = 16/47 (34%)
Frame = -1
Query: 821 FXXGGGXVFXFXXXPXXGGXGXXPPPPXGXPPPXXXXKKKXXGGXPP 681
+ GGG P G G PPPP PPP PP
Sbjct: 651 YGSGGGSSMPMPVPPPGGLGGFMPPPP--PPPPMPGDLSSLLAAAPP 695
>AJ243905-1|CAB64866.1| 699|Caenorhabditis elegans SF1 protein
protein.
Length = 699
Score = 29.1 bits (62), Expect = 6.3
Identities = 15/47 (31%), Positives = 16/47 (34%)
Frame = -1
Query: 821 FXXGGGXVFXFXXXPXXGGXGXXPPPPXGXPPPXXXXKKKXXGGXPP 681
+ GGG P G G PPPP PPP PP
Sbjct: 651 YGSGGGSSMPMPVPPPGGLGGFMPPPP--PPPPMPGDLSSLLAAAPP 695
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,767,376
Number of Sequences: 27780
Number of extensions: 226222
Number of successful extensions: 818
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 361
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 701
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3192944148
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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