Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP07_FL5_F11
(1154 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 33 0.075
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 31 0.30
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 27 1.1
SPBC83.01 |ucp8||UBA/EH/EF hand domain protein Ucp8|Schizosaccha... 27 3.7
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S... 27 6.5
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 27 6.5
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2... 27 6.5
SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces... 27 6.5
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1... 27 6.5
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 33.1 bits (72), Expect = 0.075
Identities = 11/19 (57%), Positives = 12/19 (63%)
Frame = -2
Query: 826 PPPPPPXPXXKKKKXPPPP 770
PPPPPP P + PPPP
Sbjct: 9 PPPPPPPPGFEPPSQPPPP 27
Score = 29.5 bits (63), Expect = 0.93
Identities = 10/20 (50%), Positives = 11/20 (55%)
Frame = -1
Query: 824 PPPPPXPXXKKKKXTXPPPP 765
PPPPP P + PPPP
Sbjct: 10 PPPPPPPGFEPPSQPPPPPP 29
Score = 29.5 bits (63), Expect = 0.93
Identities = 10/19 (52%), Positives = 11/19 (57%)
Frame = -2
Query: 826 PPPPPPXPXXKKKKXPPPP 770
PPPPPP + PPPP
Sbjct: 10 PPPPPPPGFEPPSQPPPPP 28
Score = 28.7 bits (61), Expect = 1.6
Identities = 10/19 (52%), Positives = 11/19 (57%)
Frame = -2
Query: 826 PPPPPPXPXXKKKKXPPPP 770
PPPPPP + PPPP
Sbjct: 11 PPPPPPGFEPPSQPPPPPP 29
Score = 28.3 bits (60), Expect = 2.1
Identities = 10/20 (50%), Positives = 11/20 (55%)
Frame = -1
Query: 824 PPPPPXPXXKKKKXTXPPPP 765
PPPPP P + PPPP
Sbjct: 9 PPPPPPPPGFEPPSQPPPPP 28
Score = 27.5 bits (58), Expect = 3.7
Identities = 10/18 (55%), Positives = 11/18 (61%)
Frame = -2
Query: 826 PPPPPPXPXXKKKKXPPP 773
PPPPPP KK+K P
Sbjct: 24 PPPPPPPGYVKKRKNKTP 41
Score = 26.6 bits (56), Expect = 6.5
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -1
Query: 1028 PPPPPPPP 1005
PPPPPPPP
Sbjct: 9 PPPPPPPP 16
Score = 26.6 bits (56), Expect = 6.5
Identities = 9/22 (40%), Positives = 11/22 (50%)
Frame = -1
Query: 824 PPPPPXPXXKKKKXTXPPPPXF 759
PPPPP + PPPP +
Sbjct: 11 PPPPPPGFEPPSQPPPPPPPGY 32
Score = 26.2 bits (55), Expect = 8.6
Identities = 9/19 (47%), Positives = 10/19 (52%)
Frame = -2
Query: 826 PPPPPPXPXXKKKKXPPPP 770
PPPPP + PPPP
Sbjct: 12 PPPPPGFEPPSQPPPPPPP 30
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 31.1 bits (67), Expect = 0.30
Identities = 11/19 (57%), Positives = 11/19 (57%)
Frame = -2
Query: 826 PPPPPPXPXXKKKKXPPPP 770
PPPPPP P PPPP
Sbjct: 761 PPPPPPPPGVAGAGPPPPP 779
Score = 27.9 bits (59), Expect = 2.8
Identities = 10/19 (52%), Positives = 10/19 (52%)
Frame = -2
Query: 826 PPPPPPXPXXKKKKXPPPP 770
PPPPPP PPPP
Sbjct: 763 PPPPPPGVAGAGPPPPPPP 781
Score = 27.5 bits (58), Expect = 3.7
Identities = 10/20 (50%), Positives = 10/20 (50%)
Frame = -1
Query: 824 PPPPPXPXXKKKKXTXPPPP 765
PPPPP P PPPP
Sbjct: 761 PPPPPPPPGVAGAGPPPPPP 780
Score = 27.5 bits (58), Expect = 3.7
Identities = 10/20 (50%), Positives = 10/20 (50%)
Frame = -1
Query: 824 PPPPPXPXXKKKKXTXPPPP 765
PPPPP P PPPP
Sbjct: 762 PPPPPPPGVAGAGPPPPPPP 781
Score = 27.5 bits (58), Expect = 3.7
Identities = 10/19 (52%), Positives = 10/19 (52%)
Frame = -2
Query: 826 PPPPPPXPXXKKKKXPPPP 770
PPPPPP PPPP
Sbjct: 762 PPPPPPPGVAGAGPPPPPP 780
Score = 26.6 bits (56), Expect = 6.5
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -1
Query: 1028 PPPPPPPP 1005
PPPPPPPP
Sbjct: 761 PPPPPPPP 768
Score = 26.6 bits (56), Expect = 6.5
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -1
Query: 1028 PPPPPPPP 1005
PPPPPPPP
Sbjct: 775 PPPPPPPP 782
Score = 26.6 bits (56), Expect = 6.5
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -1
Query: 1028 PPPPPPPP 1005
PPPPPPPP
Sbjct: 776 PPPPPPPP 783
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 27.1 bits (57), Expect = 4.9
Identities = 9/18 (50%), Positives = 10/18 (55%)
Frame = -2
Query: 826 PPPPPPXPXXKKKKXPPP 773
PPPPPP + PPP
Sbjct: 361 PPPPPPRSAPSTGRQPPP 378
Score = 23.8 bits (49), Expect(2) = 1.1
Identities = 7/7 (100%), Positives = 7/7 (100%)
Frame = -1
Query: 1028 PPPPPPP 1008
PPPPPPP
Sbjct: 311 PPPPPPP 317
Score = 23.8 bits (49), Expect(2) = 1.1
Identities = 7/7 (100%), Positives = 7/7 (100%)
Frame = -1
Query: 1025 PPPPPPP 1005
PPPPPPP
Sbjct: 337 PPPPPPP 343
>SPBC83.01 |ucp8||UBA/EH/EF hand domain protein
Ucp8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 884
Score = 27.5 bits (58), Expect = 3.7
Identities = 10/19 (52%), Positives = 10/19 (52%)
Frame = -2
Query: 826 PPPPPPXPXXKKKKXPPPP 770
P PP P P K PPPP
Sbjct: 729 PAPPTPAPTPAVKHHPPPP 747
>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
Cap1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 551
Score = 26.6 bits (56), Expect = 6.5
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -1
Query: 1028 PPPPPPPP 1005
PPPPPPPP
Sbjct: 306 PPPPPPPP 313
Score = 26.6 bits (56), Expect = 6.5
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -1
Query: 1028 PPPPPPPP 1005
PPPPPPPP
Sbjct: 307 PPPPPPPP 314
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 26.6 bits (56), Expect = 6.5
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -1
Query: 1028 PPPPPPPP 1005
PPPPPPPP
Sbjct: 189 PPPPPPPP 196
Score = 26.6 bits (56), Expect = 6.5
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -1
Query: 1028 PPPPPPPP 1005
PPPPPPPP
Sbjct: 190 PPPPPPPP 197
>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1217
Score = 26.6 bits (56), Expect = 6.5
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -1
Query: 1028 PPPPPPPP 1005
PPPPPPPP
Sbjct: 1095 PPPPPPPP 1102
Score = 26.2 bits (55), Expect = 8.6
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = -2
Query: 826 PPPPPPXPXXKKKK 785
PPPPPP P +KK
Sbjct: 1095 PPPPPPPPAEVEKK 1108
>SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 713
Score = 26.6 bits (56), Expect = 6.5
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -1
Query: 1028 PPPPPPPP 1005
PPPPPPPP
Sbjct: 370 PPPPPPPP 377
>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1841
Score = 26.6 bits (56), Expect = 6.5
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -1
Query: 1028 PPPPPPPP 1005
PPPPPPPP
Sbjct: 945 PPPPPPPP 952
Score = 26.6 bits (56), Expect = 6.5
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -1
Query: 1028 PPPPPPPP 1005
PPPPPPPP
Sbjct: 946 PPPPPPPP 953
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,329,904
Number of Sequences: 5004
Number of extensions: 32416
Number of successful extensions: 421
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 162
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 617576420
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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