Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP07_FL5_F10
         (886 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC25B8.19c ||SPAC683.01c|transcription factor, zf-fungal binuc...    28   2.0  
SPCC1020.10 |oca2||serine/threonine protein kinase Oca2 |Schizos...    27   3.6  
SPBC651.07 |csa1||sequence orphan|Schizosaccharomyces pombe|chr ...    26   8.2  
SPAC25H1.09 |mde5|meu30, SPAC4A8.01|alpha-amylase homolog Mde5|S...    26   8.2  

>SPAC25B8.19c ||SPAC683.01c|transcription factor, zf-fungal
           binuclear cluster type |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 522

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 17/45 (37%), Positives = 17/45 (37%), Gaps = 1/45 (2%)
 Frame = -2

Query: 336 HKRSEDTSQVLQPXCPCVPT-QSFVDPXHLKICLYSHGGPRTHEC 205
           H  S  TS        C    Q F  P  LKI  YSH G R   C
Sbjct: 454 HTGSSSTSSAANVRYRCTECLQGFSRPSSLKIHTYSHTGERPFVC 498


>SPCC1020.10 |oca2||serine/threonine protein kinase Oca2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 650

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 14/46 (30%), Positives = 24/46 (52%)
 Frame = +2

Query: 395 RARVSNXGSVSWIKRLDIXTPISMQLDNWPNDMQTCTFKFGSRMHN 532
           RA +++   +  +KR DI    +   DNW ND+  C  + G  +H+
Sbjct: 588 RAVIAHMLELDPVKRYDIHRVFA---DNWINDISMCHMENGKVIHS 630


>SPBC651.07 |csa1||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 268

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 2/55 (3%)
 Frame = -1

Query: 319 HQPSAAAPXPLRSNSVVCRSXSFEDLP--VFARWTSDSRMLACXKCRVRXTTILE 161
           + P+  A   L S S +CR     DLP   F+   S +  L   +  +R T ++E
Sbjct: 207 YNPTTFASRDLSSISYICRLLDTMDLPSDTFSHQKSQASFLCALQQILRCTELIE 261


>SPAC25H1.09 |mde5|meu30, SPAC4A8.01|alpha-amylase homolog
           Mde5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 513

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 11/36 (30%), Positives = 18/36 (50%)
 Frame = +2

Query: 479 WPNDMQTCTFKFGSRMHNSDEMDFVIDKRIYSMFES 586
           WP D+ T    FG+     D  D + D+ +Y M ++
Sbjct: 105 WPQDLYTLNPHFGTEQDLIDLADALHDRGMYLMVDT 140


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,784,564
Number of Sequences: 5004
Number of extensions: 48724
Number of successful extensions: 104
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 104
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 444486180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)