Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP07_FL5_F10
         (886 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0767 - 11009682-11010251                                         32   0.70 
04_01_0159 - 1824343-1824405,1824485-1824595,1825282-1825448,182...    30   2.8  
07_03_1747 + 29188568-29188715,29188793-29189541                       29   3.8  
02_01_0296 + 1978565-1981197,1981216-1981639,1982280-1982771,198...    28   8.7  

>03_02_0767 - 11009682-11010251
          Length = 189

 Score = 31.9 bits (69), Expect = 0.70
 Identities = 22/56 (39%), Positives = 27/56 (48%)
 Frame = +3

Query: 159 DSKIVVXLTLHLXHANIRESEVHRANTGRSSNXLDRQTTELERRGXGAAALGWCPR 326
           D   +  L LHL  A  R   V RA  GRSS  + R+  EL +     +AL W PR
Sbjct: 91  DDTELARLCLHLDDAGHRWKHVSRAVYGRSSCAVKRRWRELRKSDAFLSAL-WRPR 145


>04_01_0159 -
           1824343-1824405,1824485-1824595,1825282-1825448,
           1825853-1826029,1826404-1826656
          Length = 256

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 17/50 (34%), Positives = 23/50 (46%)
 Frame = -1

Query: 403 TGAESVVPGGGCSRV*QYHVRPPQAFRGHQPSAAAPXPLRSNSVVCRSXS 254
           T + S    GGCS    +   PP AFRG+  +   P     + V CR+ S
Sbjct: 59  TASASASASGGCSPAPPWAPSPP-AFRGNVKARYQPVMFNGSIVYCRTPS 107


>07_03_1747 + 29188568-29188715,29188793-29189541
          Length = 298

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 18/51 (35%), Positives = 26/51 (50%)
 Frame = +3

Query: 372 PPPGTTLSAPVYLIXAPSPG*SAWTLXLQFLCS*TIGPTTCRLARSSSVLG 524
           PPP TT++  V L   P+   S   +  QF+C+     TTC  + S S+ G
Sbjct: 213 PPPTTTMAQHVVL---PTAAASCHQMQDQFVCARAAETTTCCWSESESLPG 260


>02_01_0296 +
           1978565-1981197,1981216-1981639,1982280-1982771,
           1982950-1983087
          Length = 1228

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = -3

Query: 401 GRGERSPRRWLQPRLAVPRQASTSVPRTP 315
           GRG RS  R L+P LA+   A + +P  P
Sbjct: 442 GRGPRSTLRILRPGLAISEMARSMLPAEP 470


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,516,471
Number of Sequences: 37544
Number of extensions: 452688
Number of successful extensions: 1057
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1016
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1057
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2503236492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)