Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP07_FL5_F08
         (861 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC20H4.08 |||phosphatase activator |Schizosaccharomyces pombe|...    28   2.0  
SPCC4G3.05c |mus81||Holliday junction resolvase subunit Mus81|Sc...    27   3.4  
SPBC31F10.04c |srb4|med17|mediator complex subunit Srb4|Schizosa...    26   7.9  

>SPAC20H4.08 |||phosphatase activator |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 270

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 16/56 (28%), Positives = 24/56 (42%)
 Frame = -3

Query: 619 LAKTSAQMVVALWSQHG*TCGAVSRPTAVSYESYQIWRRLLPLTMVTSRAPRNASQ 452
           L++     ++ LW Q G  C  ++    V+     +WRR   L  VT    R  SQ
Sbjct: 214 LSEEFLSKILKLWGQPGNKCWWINEVIKVNGSLINVWRRKQWLLEVTIMGNRENSQ 269


>SPCC4G3.05c |mus81||Holliday junction resolvase subunit
           Mus81|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 608

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = -1

Query: 543 PPQFLTNLIRFGGGSCH*PW*RVEPPETPHNEVRDG 436
           PP F+T++ + G  S H     V      HNEV DG
Sbjct: 237 PPNFVTSINKAGSSSDHGGELHVTYCPVDHNEVSDG 272


>SPBC31F10.04c |srb4|med17|mediator complex subunit
           Srb4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 545

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 9/30 (30%), Positives = 18/30 (60%)
 Frame = +2

Query: 512 NLIRFVRNCGGPGNSSAGSAVLTPQRNDHL 601
           +L++  ++CG  G +  G  +L P  +DH+
Sbjct: 313 SLLQEAQSCGNQGVNFTGDEILVPISDDHV 342


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,678,553
Number of Sequences: 5004
Number of extensions: 78063
Number of successful extensions: 221
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 216
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 221
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 428468660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)