Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP07_FL5_F08
(861 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0305 - 2181727-2184793,2185635-2185945 32 0.68
06_03_1133 - 27886823-27887088,27887837-27888629,27888674-27889000 31 1.2
01_06_1726 - 39461451-39461791,39462127-39462183,39462527-394626... 31 1.2
04_04_0667 + 27097741-27098085,27098203-27098547 31 1.6
01_06_0901 - 32849722-32849745,32849788-32849856,32850817-328509... 30 2.7
04_03_0905 - 20722090-20722207,20722314-20722395,20722698-207228... 29 3.6
11_06_0742 - 26841041-26841314,26841678-26841775 29 4.8
11_01_0462 + 3574200-3574552,3574619-3574760,3574867-3574878 29 4.8
05_07_0236 - 28582157-28582552,28582639-28582911,28583324-285835... 29 4.8
03_05_0979 - 29380899-29381063,29381157-29381210,29381451-293814... 29 4.8
03_05_0428 + 24152409-24152783,24152885-24153139,24153204-24153917 29 6.3
02_01_0002 - 9542-9762,11085-11196,11328-12575 29 6.3
07_01_0588 + 4370771-4370983,4371069-4371167,4371268-4371399,437... 28 8.3
06_03_0404 - 20460555-20462135 28 8.3
06_01_0190 + 1475240-1475633,1475720-1476237 28 8.3
04_04_0935 - 29509135-29511732 28 8.3
04_01_0508 + 6647812-6647820,6647864-6648226,6649351-6650673,665... 28 8.3
>07_01_0305 - 2181727-2184793,2185635-2185945
Length = 1125
Score = 31.9 bits (69), Expect = 0.68
Identities = 25/94 (26%), Positives = 47/94 (50%), Gaps = 7/94 (7%)
Frame = +1
Query: 508 AKSDKIRKKLRWAWKQLRRFSRVDSTTQRPSVRLFWREHLHASVDGRELRESTRTRHP-- 681
+K+ K+ +K+ W++++++ S ++ + PS+R F H + D E+ HP
Sbjct: 1003 SKNPKL-EKIVWSFREMKSISGIE---RLPSLRSF-ELHGDCNPDKVEIALKDHPNHPDL 1057
Query: 682 -----QSGLGSDARK*PDGTSCSSCTLISTPSHP 768
+ G G DA D + S+C +S P+HP
Sbjct: 1058 EHHGNRQGQG-DAAGSLDADAASTCASVSAPNHP 1090
>06_03_1133 - 27886823-27887088,27887837-27888629,27888674-27889000
Length = 461
Score = 31.1 bits (67), Expect = 1.2
Identities = 17/54 (31%), Positives = 24/54 (44%)
Frame = +1
Query: 466 GGLDSSPWSVARAAAKSDKIRKKLRWAWKQLRRFSRVDSTTQRPSVRLFWREHL 627
GGL PW+ A D +R+ W +RR + + + S RL W HL
Sbjct: 24 GGLKKGPWTQAEDKLLVDHVRRHGEGNWNAVRRETGLQRCGK--SCRLRWANHL 75
>01_06_1726 -
39461451-39461791,39462127-39462183,39462527-39462674,
39462775-39463010,39463025-39463059,39463364-39463497
Length = 316
Score = 31.1 bits (67), Expect = 1.2
Identities = 17/63 (26%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Frame = +2
Query: 479 RHHGQWQEPPPNLIRFVRNCGG--PGNSSAGSAVLTPQRNDHLCACFGENICMHLLMDAN 652
R HG+++ L+R + C G P N++ G + R + +CF +++ L+DA
Sbjct: 243 RQHGRYELARRMLLRSLELCPGHAPANNNLGLVSIAEGRYEEAISCFEKSLQSDPLLDAA 302
Query: 653 FAN 661
+N
Sbjct: 303 KSN 305
>04_04_0667 + 27097741-27098085,27098203-27098547
Length = 229
Score = 30.7 bits (66), Expect = 1.6
Identities = 25/74 (33%), Positives = 33/74 (44%), Gaps = 5/74 (6%)
Frame = +1
Query: 529 KKLRWAWKQLRRF-----SRVDSTTQRPSVRLFWREHLHASVDGRELRESTRTRHPQSGL 693
K+ RW KQL S+ D+ R V +E L +V ELRE R R +SG
Sbjct: 75 KRARWRSKQLEHDYAALRSKYDALHSR--VESLKQEKLALTVQLHELRERLREREERSGN 132
Query: 694 GSDARK*PDGTSCS 735
G A +SC+
Sbjct: 133 GGAATTAASSSSCN 146
>01_06_0901 -
32849722-32849745,32849788-32849856,32850817-32850927,
32851002-32851259
Length = 153
Score = 29.9 bits (64), Expect = 2.7
Identities = 14/47 (29%), Positives = 22/47 (46%)
Frame = -3
Query: 460 ASQ*GPGWSLAPMGSLSRRPELRRDNMPWAHPPVALATVRLLSGFGH 320
AS P S++P + ++RP L D+ PW A +R + H
Sbjct: 20 ASTTAPASSVSPAAAAAKRPHLAGDDAPWRAAATGAAGIRPVPRIHH 66
>04_03_0905 -
20722090-20722207,20722314-20722395,20722698-20722851,
20723026-20723089,20724282-20724404,20725326-20725452,
20725541-20726171
Length = 432
Score = 29.5 bits (63), Expect = 3.6
Identities = 17/46 (36%), Positives = 21/46 (45%), Gaps = 2/46 (4%)
Frame = -2
Query: 638 TDACRCSRQNKRTDGRCVVESTRLNLR--SCFQAHRSFLRILSDLA 507
++ R Q +R GRC RLNL C+Q H L L D A
Sbjct: 191 SETARAPPQERRRGGRCTCGVARLNLPFVRCYQTHYLELWTLEDWA 236
>11_06_0742 - 26841041-26841314,26841678-26841775
Length = 123
Score = 29.1 bits (62), Expect = 4.8
Identities = 19/62 (30%), Positives = 30/62 (48%)
Frame = +1
Query: 352 LRLPADVPKAYYHAAVQDGGLAIPSVRATIPDLIVRRFGGLDSSPWSVARAAAKSDKIRK 531
+R P D A V D + P+ A +PDL++ R LD SP + + A + RK
Sbjct: 57 IRRPGDHRWPEMEANVTDRAASSPNRAAALPDLVILRL--LDGSPARPSLSQASAYPERK 114
Query: 532 KL 537
++
Sbjct: 115 RM 116
>11_01_0462 + 3574200-3574552,3574619-3574760,3574867-3574878
Length = 168
Score = 29.1 bits (62), Expect = 4.8
Identities = 16/40 (40%), Positives = 20/40 (50%)
Frame = -3
Query: 148 PQNRHQDIATAQHNSPA*AAYLQY*RFAQSGSDASCGGHP 29
PQNRH++I + Q + A Q RF GS C HP
Sbjct: 6 PQNRHREIPSLQQSQREATAARQTRRF--EGSAGQCDPHP 43
>05_07_0236 -
28582157-28582552,28582639-28582911,28583324-28583560,
28583653-28583694,28583782-28583964,28584393-28584524,
28585605-28586057
Length = 571
Score = 29.1 bits (62), Expect = 4.8
Identities = 14/42 (33%), Positives = 24/42 (57%)
Frame = -2
Query: 221 GLRGALEMLFRALLILCSNVTHPEASKSTPRYRHRSTQLTCL 96
G++G +L LL+LCSNV+ +A ++R++ T L
Sbjct: 4 GIKGLTFLLLLVLLVLCSNVSLSDARSGKHWRQNRASSSTLL 45
>03_05_0979 -
29380899-29381063,29381157-29381210,29381451-29381456,
29382167-29382280,29382379-29382422,29382540-29382615
Length = 152
Score = 29.1 bits (62), Expect = 4.8
Identities = 22/72 (30%), Positives = 30/72 (41%), Gaps = 2/72 (2%)
Frame = +2
Query: 470 GSTRHHGQWQEPPPNLIRFVRNCGGPGNSSAGSAVL--TPQRNDHLCACFGENICMHLLM 643
G HH Q +EPPP V GG G ++ A++ P R + CA G +
Sbjct: 26 GGELHHHQIKEPPPE----VEQTGGKGWAAMSEALIGSRPPRCEGKCAPCGRCEAVQEAF 81
Query: 644 DANFANPHAPDI 679
N A AP +
Sbjct: 82 CTNSAIASAPPL 93
>03_05_0428 + 24152409-24152783,24152885-24153139,24153204-24153917
Length = 447
Score = 28.7 bits (61), Expect = 6.3
Identities = 14/50 (28%), Positives = 22/50 (44%)
Frame = +2
Query: 479 RHHGQWQEPPPNLIRFVRNCGGPGNSSAGSAVLTPQRNDHLCACFGENIC 628
RH Q QE N+ + G G +G A TP+ + +C+ +C
Sbjct: 204 RHQQQQQEAEENVKIVEVDTGFGGGGGSGEAHCTPRTSSRRSSCYATPLC 253
>02_01_0002 - 9542-9762,11085-11196,11328-12575
Length = 526
Score = 28.7 bits (61), Expect = 6.3
Identities = 17/65 (26%), Positives = 33/65 (50%)
Frame = +1
Query: 121 WRYLGVDFEASGCVTLEHSISSALNNISRAPLKPQQRLEILRAHLIPRFQHGFVLGNISD 300
WR G + + E I+ ++ ++R LKP ++ R +++ RF H ++L D
Sbjct: 192 WREEGAEVMLEPSESNEWCIAVKIHGVNRISLKPSEQ----RFYVVNRFTHAYILA--VD 245
Query: 301 DRLRM 315
D L++
Sbjct: 246 DGLKI 250
>07_01_0588 +
4370771-4370983,4371069-4371167,4371268-4371399,
4372027-4372092,4372458-4372523,4372633-4372707,
4373423-4373653
Length = 293
Score = 28.3 bits (60), Expect = 8.3
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = +2
Query: 707 ANNRTGLRAVRAPSYQRPPIPHSRIKRRKG 796
A + G A+ AP Q+PP P +++ R+G
Sbjct: 108 AQPKPGEGAMAAPQPQQPPAPRPKVRARRG 137
>06_03_0404 - 20460555-20462135
Length = 526
Score = 28.3 bits (60), Expect = 8.3
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = +1
Query: 331 RKAVGQWLRLPADVPKAYYHAAVQDGGLAIPS 426
R+A W+ A V + YY A D GLA P+
Sbjct: 140 RRAATAWVDSGATVGEMYYAVAKADAGLAFPA 171
>06_01_0190 + 1475240-1475633,1475720-1476237
Length = 303
Score = 28.3 bits (60), Expect = 8.3
Identities = 17/32 (53%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
Frame = -2
Query: 554 CFQ--AHRSFLRILSDLAAALATDHGDESSPP 465
CF AH S LR ++DLA A+A D GDE P
Sbjct: 103 CFHPLAHAS-LRHVADLAGAVAADIGDELQVP 133
>04_04_0935 - 29509135-29511732
Length = 865
Score = 28.3 bits (60), Expect = 8.3
Identities = 22/63 (34%), Positives = 34/63 (53%), Gaps = 8/63 (12%)
Frame = +1
Query: 475 DSSPWSVARAA-AKSDKIRKKLRWAWKQLRRFSRVDSTTQRPSV----RLF---WREHLH 630
D W++ AA ++S ++R+ L + R+ R+DSTT S+ RLF W + LH
Sbjct: 234 DVVSWNMMIAALSQSGRVREALGLVVEMHRKGVRLDSTTYTSSLTACARLFSLGWGKQLH 293
Query: 631 ASV 639
A V
Sbjct: 294 AKV 296
>04_01_0508 +
6647812-6647820,6647864-6648226,6649351-6650673,
6653569-6653766,6654485-6654568,6655175-6655920,
6656480-6657341
Length = 1194
Score = 28.3 bits (60), Expect = 8.3
Identities = 17/42 (40%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Frame = +2
Query: 461 VSGGSTRHHGQ-WQEPPPNLIRFVRNCGGPGNSSAGSAVLTP 583
V+ ST+H Q W+E N ++F RNC SS S++ TP
Sbjct: 555 VARKSTKHATQTWREKLKNTVKFARNC--IHISSVNSSLPTP 594
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,501,428
Number of Sequences: 37544
Number of extensions: 659155
Number of successful extensions: 2085
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 2001
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2084
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2409218220
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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