Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP07_FL5_F08
         (861 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X51967-1|CAA36225.1| 1057|Drosophila melanogaster protein ( Dros...   126   4e-29

>X51967-1|CAA36225.1| 1057|Drosophila melanogaster protein (
            Drosophila melanogasterDNA for type II retrotransposable
            element  R2Dm.  ).
          Length = 1057

 Score =  126 bits (304), Expect = 4e-29
 Identities = 75/209 (35%), Positives = 108/209 (51%), Gaps = 2/209 (0%)
 Frame = +1

Query: 40   RKKHHYLTERTFNIGGKPLRQVSCVERWRYLGVDFEASGCVTLE--HSISSALNNISRAP 213
            ++K   L  ++F +G   +  +   + W+YLG++F A+G V       I   L  +++AP
Sbjct: 626  KQKCTVLEAQSFYVGSSEIPSLKRTDEWKYLGINFTATGRVRCNPAEDIGPKLQRLTKAP 685

Query: 214  LKPQQRLEILRAHLIPRFQHGFVLGNISDDRLRMLDVQIRKAVGQWLRLPADVPKAYYHA 393
            LKPQQRL  LR  LIP+  H   LG+++   LR  D  IR  V +WL LP DVP A+ HA
Sbjct: 686  LKPQQRLFALRTVLIPQLYHKLALGSVAIGVLRKTDKLIRYYVRRWLNLPLDVPIAFVHA 745

Query: 394  AVQDGGLAIPSVRATIPDLIVRRFGGLDSSPWSVARAAAKSDKIRKKLRWAWKQLRRFSR 573
              + GGL IPS+R   P L +RR   +   P       A S    +K R    + R  + 
Sbjct: 746  PPKSGGLGIPSLRWVAPMLRLRRLSNI-KWPHLTQNEVASSFLEAEKQR---ARDRLLAE 801

Query: 574  VDSTTQRPSVRLFWREHLHASVDGRELRE 660
             +    RP++  +W   L+ SVDG  LRE
Sbjct: 802  QNELLSRPAIEKYWANKLYLSVDGSGLRE 830


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 43,908,462
Number of Sequences: 53049
Number of extensions: 1040706
Number of successful extensions: 2892
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 2722
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2890
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 4147514904
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)