Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP07_FL5_F07
         (845 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC4C3.12 |sep1||fork head transcription factor Sep1|Schizosacc...    31   0.27 
SPCC736.11 |ago1|csp9|argonaute|Schizosaccharomyces pombe|chr 3|...    27   2.5  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    26   5.8  
SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1 |Schizos...    26   7.7  

>SPBC4C3.12 |sep1||fork head transcription factor
           Sep1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 663

 Score = 30.7 bits (66), Expect = 0.27
 Identities = 17/44 (38%), Positives = 22/44 (50%)
 Frame = -1

Query: 737 HHPPIRGGAPPDRTPRRLEAAGSKSRPSPSVEGPTSQSERGSST 606
           H   IR G        +L   G  SRP+P V+  TS ++ GSST
Sbjct: 200 HFWSIRPGHEEQFLKLKLRKPGVNSRPAPPVQDVTSSTKYGSST 243


>SPCC736.11 |ago1|csp9|argonaute|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 834

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = -2

Query: 439 CDDVCHACARQTGRLPVVPPRSYDQRVVSVTNYAE 335
           C ++C+  AR T  + +VPP  Y   V ++  Y +
Sbjct: 764 CYNLCYVYARATSAVSLVPPVYYAHLVSNLARYQD 798


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 14/40 (35%), Positives = 16/40 (40%)
 Frame = -1

Query: 770 PYGSPV*XFXPHHPPIRGGAPPDRTPRRLEAAGSKSRPSP 651
           P  +P     P   PI GG PP   P  +  AG    P P
Sbjct: 742 PTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPP 781


>SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 855

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 13/53 (24%), Positives = 24/53 (45%)
 Frame = -2

Query: 592 KAEVPKTGHPDPDADASDHEVGTQRRRSSRPVKQQGLGFVERHLESQPFNPCD 434
           K  +  +  PDP+A    H++ +Q     +        FV+R ++S  F+  D
Sbjct: 160 KRSIADSHFPDPNAMQRPHDLESQPFSYPKIHASNSFNFVKRDIDSSNFSNLD 212


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,509,721
Number of Sequences: 5004
Number of extensions: 78102
Number of successful extensions: 239
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 225
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 239
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 418457710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)