Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP07_FL5_F06
(875 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_03_0366 - 13102147-13102281,13102560-13102739,13102791-131029... 32 0.52
07_03_1747 + 29188568-29188715,29188793-29189541 31 1.6
02_05_0192 + 26602247-26602617,26602701-26603016 31 1.6
11_06_0411 - 23230580-23230795,23231407-23231862,23232142-232321... 30 2.1
08_02_1291 + 25930056-25930067,25930289-25930334,25930434-259305... 29 3.7
11_01_0496 + 3811434-3811566,3811578-3811819 29 4.9
07_03_0615 + 19983003-19983238,19983297-19983558,19983651-199839... 29 6.5
04_03_0589 - 17604361-17604800,17604887-17604949,17605025-176052... 29 6.5
03_03_0153 - 14910420-14910769,14910946-14911008,14911084-149113... 29 6.5
07_03_0809 - 21669632-21669637,21669871-21670131,21670573-216707... 28 8.5
04_04_0061 + 22426874-22427241,22428106-22428298,22429726-22429731 28 8.5
02_01_0296 + 1978565-1981197,1981216-1981639,1982280-1982771,198... 28 8.5
01_07_0188 - 41866689-41866763,41866889-41867155,41867277-418677... 28 8.5
>05_03_0366 -
13102147-13102281,13102560-13102739,13102791-13102992,
13104385-13104575
Length = 235
Score = 32.3 bits (70), Expect = 0.52
Identities = 21/56 (37%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Frame = -1
Query: 281 HQPSAAAPFPCVPTQSFVDPIHLKICQYPHGGLGLTNVSMSQM-QGQVDYDFGVGG 117
H P AAA P VP++ P L + GG GL S S + G + D G+GG
Sbjct: 7 HSPRAAAAAPSVPSR-LPRPFLLSLSSPSRGGSGLVAASASAVAAGGSEGDGGIGG 61
>07_03_1747 + 29188568-29188715,29188793-29189541
Length = 298
Score = 30.7 bits (66), Expect = 1.6
Identities = 19/51 (37%), Positives = 27/51 (52%)
Frame = +1
Query: 334 PPPGTTLSAPVYLITAPSPG*SAWTLALQFLCS*TIGPTTCRLARSSSVLG 486
PPP TT++ V L TA + S + QF+C+ TTC + S S+ G
Sbjct: 213 PPPTTTMAQHVVLPTAAA---SCHQMQDQFVCARAAETTTCCWSESESLPG 260
>02_05_0192 + 26602247-26602617,26602701-26603016
Length = 228
Score = 30.7 bits (66), Expect = 1.6
Identities = 20/58 (34%), Positives = 24/58 (41%), Gaps = 1/58 (1%)
Frame = -2
Query: 739 WRAARQPRRAEAGAPTANTGAGRQRVCRGASPGKTSGTFATRASTS-PRSWLCTALDR 569
WRA Q R AEA +G G + G + G G AS PR+W A R
Sbjct: 86 WRATAQRRFAEAVVRVGGSGDGGRDCGGGGNVGGAEGVRGMAASDGLPRAWETVASGR 143
>11_06_0411 -
23230580-23230795,23231407-23231862,23232142-23232195,
23232251-23232367
Length = 280
Score = 30.3 bits (65), Expect = 2.1
Identities = 16/39 (41%), Positives = 22/39 (56%)
Frame = +2
Query: 179 VRVHRADTGRSSNELDRQTTELERRGMGLQHLAGVLGTL 295
V+ H + R S EL+RQ ELER+G L+ G L +
Sbjct: 89 VQRHGEELERQSRELERQREELERQGRELKMKDGKLNRM 127
>08_02_1291 +
25930056-25930067,25930289-25930334,25930434-25930546,
25930645-25930930,25931357-25931421,25931642-25931693,
25931774-25931883,25932611-25932641,25932853-25933004,
25934622-25934840
Length = 361
Score = 29.5 bits (63), Expect = 3.7
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = -1
Query: 194 HGGLGLTNVSMSQMQGQVDYDFGVGGRLPI 105
+GG L ++Q G Y +G GGRLP+
Sbjct: 100 YGGPALPRYGIAQFPGGSGYPYGYGGRLPM 129
>11_01_0496 + 3811434-3811566,3811578-3811819
Length = 124
Score = 29.1 bits (62), Expect = 4.9
Identities = 16/36 (44%), Positives = 18/36 (50%)
Frame = -2
Query: 736 RAARQPRRAEAGAPTANTGAGRQRVCRGASPGKTSG 629
RAA A+AG TA GAG + V G G T G
Sbjct: 33 RAAAAAATADAGGRTAGHGAGEEEVGGGDDCGTTCG 68
>07_03_0615 +
19983003-19983238,19983297-19983558,19983651-19983906,
19983982-19984044,19984131-19984570
Length = 418
Score = 28.7 bits (61), Expect = 6.5
Identities = 12/22 (54%), Positives = 13/22 (59%)
Frame = -3
Query: 627 HLPRELPPRHGPGSAPHWTDPS 562
H+PR PP HG AP T PS
Sbjct: 241 HVPRPTPPPHGGFRAPFSTPPS 262
>04_03_0589 -
17604361-17604800,17604887-17604949,17605025-17605280,
17605373-17605634,17605739-17605885,17606118-17606236,
17606373-17606531,17606911-17606947,17607023-17607174
Length = 544
Score = 28.7 bits (61), Expect = 6.5
Identities = 12/22 (54%), Positives = 13/22 (59%)
Frame = -3
Query: 627 HLPRELPPRHGPGSAPHWTDPS 562
H+PR PP HG AP T PS
Sbjct: 367 HVPRPTPPLHGGFRAPFSTPPS 388
>03_03_0153 -
14910420-14910769,14910946-14911008,14911084-14911339,
14911432-14911522,14911798-14912096,14912177-14912295,
14922536-14922594,14922676-14922965,14923052-14923567,
14923634-14923936
Length = 781
Score = 28.7 bits (61), Expect = 6.5
Identities = 12/22 (54%), Positives = 13/22 (59%)
Frame = -3
Query: 627 HLPRELPPRHGPGSAPHWTDPS 562
H+PR PP HG AP T PS
Sbjct: 634 HVPRPTPPPHGGFRAPFSTPPS 655
>07_03_0809 -
21669632-21669637,21669871-21670131,21670573-21670752,
21671458-21672819
Length = 602
Score = 28.3 bits (60), Expect = 8.5
Identities = 15/52 (28%), Positives = 25/52 (48%)
Frame = +3
Query: 66 SLSLMIDSLLATYDRESPPDSKIVVNLTLHLRHANIRESESTVRILADLQMN 221
+L +D L+ YD+ PPDS+ V HA + +R+L + +N
Sbjct: 160 NLWTQVDILILRYDK--PPDSRFVQEALAAHAHATEGSETTAIRLLEVISLN 209
>04_04_0061 + 22426874-22427241,22428106-22428298,22429726-22429731
Length = 188
Score = 28.3 bits (60), Expect = 8.5
Identities = 20/48 (41%), Positives = 23/48 (47%), Gaps = 3/48 (6%)
Frame = -2
Query: 712 AEAGAPTANTGA---GRQRVCRGASPGKTSGTFATRASTSPRSWLCTA 578
A AGA A TGA G C GA+PG +G A A+ S TA
Sbjct: 75 AGAGALGAGTGATVGGGVAACGGAAPGDDAGACAVAATARSASTERTA 122
>02_01_0296 +
1978565-1981197,1981216-1981639,1982280-1982771,
1982950-1983087
Length = 1228
Score = 28.3 bits (60), Expect = 8.5
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = -3
Query: 363 GRGERSPRRWLQPRLAVPRQASTSVPRTP 277
GRG RS R L+P LA+ A + +P P
Sbjct: 442 GRGPRSTLRILRPGLAISEMARSMLPAEP 470
>01_07_0188 -
41866689-41866763,41866889-41867155,41867277-41867722,
41867945-41868033,41868279-41868368,41868661-41868739,
41868979-41869042,41869597-41869684,41869776-41869836,
41869906-41869969,41870134-41870188,41870275-41870346,
41870469-41870551,41870629-41870724,41871279-41871383,
41872159-41872227,41872470-41872561,41872667-41872886
Length = 704
Score = 28.3 bits (60), Expect = 8.5
Identities = 15/56 (26%), Positives = 25/56 (44%)
Frame = -1
Query: 308 VRPPQAFRGHQPSAAAPFPCVPTQSFVDPIHLKICQYPHGGLGLTNVSMSQMQGQV 141
++PP H + AP P +P+ S P++ + PH S +QM Q+
Sbjct: 551 LQPPAHMLPHAQGSRAPLPQLPSMSGPPPVNPPLPPMPHPMAMQVQGSSNQMMPQM 606
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,645,029
Number of Sequences: 37544
Number of extensions: 569091
Number of successful extensions: 2189
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 2067
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2187
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2467979640
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -