Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP07_FL5_F03
         (803 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein ...    70   3e-13
SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0...    66   4e-12
SPAC630.08c |erg25||C-4 methylsterol oxidase|Schizosaccharomyces...    27   4.1  
SPBC17G9.07 |rps2402|rps24-2|40S ribosomal protein S24|Schizosac...    25   9.5  

>SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein
           S0B|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 287

 Score = 70.1 bits (164), Expect = 3e-13
 Identities = 33/84 (39%), Positives = 50/84 (59%)
 Frame = +2

Query: 95  VLALNEEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWGKTCSGXSCCR 274
           VL   ++D+  +LAA +H+G++N+  +ME YV+KRR+DG H+INL +TW K         
Sbjct: 10  VLNATDDDIKNLLAADSHIGSKNLEVRMENYVWKRRSDGIHIINLGKTWEKLVLAARVIA 69

Query: 275 NHRKTPLMCSSSHHGPFGQRAVLE 346
                  +C  S   P+G RAVL+
Sbjct: 70  TIENPADVCVISSR-PYGHRAVLK 92


>SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0A
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 292

 Score = 66.5 bits (155), Expect = 4e-12
 Identities = 31/88 (35%), Positives = 51/88 (57%)
 Frame = +2

Query: 83  GGLDVLALNEEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWGKTCSGX 262
           G  ++L   +ED+ ++LAA  H+G++N+  +M+ YV+KRR+DG H++NL +TW K     
Sbjct: 5   GRPNILNATDEDIKQLLAANCHIGSKNLEVRMDNYVWKRRSDGVHILNLGKTWEKLVLAA 64

Query: 263 SCCRNHRKTPLMCSSSHHGPFGQRAVLE 346
                      +C  S    +G RAVL+
Sbjct: 65  RVIATIENPADVCVVSTR-TYGHRAVLK 91


>SPAC630.08c |erg25||C-4 methylsterol oxidase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 300

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = -1

Query: 278 GYDSTXSQNKFFPRYDAS*SHGYH 207
           GYD   S NKF P +  +  H YH
Sbjct: 232 GYDFPWSLNKFLPIWAGADHHDYH 255


>SPBC17G9.07 |rps2402|rps24-2|40S ribosomal protein
           S24|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 134

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 12/21 (57%), Positives = 12/21 (57%)
 Frame = -1

Query: 296 SAGFFDGYDSTXSQNKFFPRY 234
           S GF   YDST S  KF P Y
Sbjct: 69  STGFALIYDSTESMKKFEPHY 89


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,803,449
Number of Sequences: 5004
Number of extensions: 50924
Number of successful extensions: 91
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 87
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 390427050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)