Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP07_FL5_F03
(803 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0582 - 4318837-4318967,4319219-4319399,4319504-4319701,431... 75 5e-14
07_03_1272 - 25360180-25360286,25360454-25360658,25360748-253609... 72 5e-13
04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,943... 39 0.005
01_01_0446 + 3321832-3322232,3322398-3322455,3322810-3323748,332... 31 1.4
10_08_0166 + 15363630-15365633,15366959-15367496,15367577-15367878 30 2.5
09_04_0688 + 19475847-19477034,19477133-19477384,19477778-194778... 29 4.3
11_06_0458 + 23808402-23808469,23808800-23809684,23810011-238119... 29 5.7
07_03_1136 + 24218601-24218734,24218769-24219906 29 5.7
09_04_0594 - 18831011-18831360,18831562-18832111,18832364-188334... 28 7.6
>03_01_0582 -
4318837-4318967,4319219-4319399,4319504-4319701,
4319791-4320053,4320453-4320597
Length = 305
Score = 75.4 bits (177), Expect = 5e-14
Identities = 40/95 (42%), Positives = 56/95 (58%), Gaps = 1/95 (1%)
Frame = +2
Query: 65 ISATMSGGLDVLALNEEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWG 244
++A G L+ E+DV MLAA HLG +N +FQME YVYKRR+DG ++INL +TW
Sbjct: 1 MAAVAGGAARALSQAEQDVQMMLAADVHLGTKNCDFQMERYVYKRRSDGIYIINLGKTWE 60
Query: 245 K-TCSGXSCCRNHRKTPLMCSSSHHGPFGQRAVLE 346
K + ++ S+ P+GQRAVL+
Sbjct: 61 KLQLAARVIVAIENPQDIIVQSAR--PYGQRAVLK 93
>07_03_1272 -
25360180-25360286,25360454-25360658,25360748-25360945,
25361034-25361296,25361865-25362009
Length = 305
Score = 72.1 bits (169), Expect = 5e-13
Identities = 37/84 (44%), Positives = 51/84 (60%), Gaps = 1/84 (1%)
Frame = +2
Query: 98 LALNEEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWGK-TCSGXSCCR 274
L+ E+D+ MLAA HLG +N +FQME YVYKRR DG ++INL +TW K +
Sbjct: 12 LSQREQDIQMMLAADVHLGTKNCDFQMERYVYKRRTDGIYIINLGKTWEKLQLAARVIVA 71
Query: 275 NHRKTPLMCSSSHHGPFGQRAVLE 346
++ S+ P+GQRAVL+
Sbjct: 72 IENPQDIIVQSAR--PYGQRAVLK 93
>04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,
9435445-9435526,9435610-9435660,9435749-9435829,
9435965-9436006,9436117-9436215,9438130-9438201,
9438557-9438680,9438850-9439723,9440274-9440456,
9440941-9442741,9442825-9443049,9443117-9443814,
9444519-9444591
Length = 1541
Score = 38.7 bits (86), Expect = 0.005
Identities = 25/76 (32%), Positives = 27/76 (35%)
Frame = +2
Query: 545 PQKIGGXGFPXXPXFPPXXGXXGGGXPXKXPXXFGXFSPXXPPGGLXGXXXXXPGPPXXX 724
P +GG G P P PP G GG P P G +P PP G P PP
Sbjct: 1151 PPPVGGLGGPPAP--PPPAGFRGGTPP---PNAHGGVAPPPPPPRGHGGVGGPPTPPGAP 1205
Query: 725 XGXXXPRXRXGXPXTP 772
P G P P
Sbjct: 1206 APPMPPGVPGGPPPPP 1221
Score = 32.3 bits (70), Expect = 0.46
Identities = 20/59 (33%), Positives = 21/59 (35%)
Frame = -3
Query: 705 GXXXXXPXXPPGGXXGENXPKXXGXXXGXPPPXXPXXGGKXGXXGXPXPPIFWGXFFVP 529
G P P G P G G PPP P GG G P PP+ G VP
Sbjct: 1093 GDYGVAPPPPSIGAGAPPPPPPPGGITGVPPP--PPIGGLGGHQAPPAPPLPEGIGGVP 1149
Score = 30.7 bits (66), Expect = 1.4
Identities = 16/41 (39%), Positives = 17/41 (41%)
Frame = +3
Query: 591 PPXXXKXGXVGPXKXPGFLGXFPPXXPXGXXGGXXXXPPAP 713
PP G P PG + PP P G GG PPAP
Sbjct: 1100 PPPSIGAGAPPPPPPPGGITGVPPPPPIGGLGG-HQAPPAP 1139
Score = 30.3 bits (65), Expect = 1.9
Identities = 17/50 (34%), Positives = 17/50 (34%)
Frame = -3
Query: 705 GXXXXXPXXPPGGXXGENXPKXXGXXXGXPPPXXPXXGGKXGXXGXPXPP 556
G P PPGG G P G G P P G G P PP
Sbjct: 1105 GAGAPPPPPPPGGITGVPPPPPIGGLGGHQAPPAPPL--PEGIGGVPPPP 1152
Score = 30.3 bits (65), Expect = 1.9
Identities = 24/85 (28%), Positives = 24/85 (28%), Gaps = 9/85 (10%)
Frame = +2
Query: 545 PQKIGGXGFPXXPXFPPXXGXXGGGXPXKXPXXFGXFSPXXPPGGL---------XGXXX 697
P IGG G P PP GG P G PP G G
Sbjct: 1124 PPPIGGLGGHQAPPAPPLPEGIGGVPPPPPVGGLGGPPAPPPPAGFRGGTPPPNAHGGVA 1183
Query: 698 XXPGPPXXXXGXXXPRXRXGXPXTP 772
P PP G P G P P
Sbjct: 1184 PPPPPPRGHGGVGGPPTPPGAPAPP 1208
Score = 30.3 bits (65), Expect = 1.9
Identities = 21/66 (31%), Positives = 22/66 (33%), Gaps = 3/66 (4%)
Frame = -3
Query: 741 GXXXPXXFXGGPGXXXXXPXXPPGGXXGENXPKXXGXXXGXPPPXXPXXGGKXG---XXG 571
G P GG G P PP G G P PPP GG G G
Sbjct: 1146 GGVPPPPPVGGLGGPPAPP--PPAGFRGGTPPPNAHGGVAPPPPPPRGHGGVGGPPTPPG 1203
Query: 570 XPXPPI 553
P PP+
Sbjct: 1204 APAPPM 1209
Score = 28.3 bits (60), Expect = 7.6
Identities = 18/53 (33%), Positives = 19/53 (35%)
Frame = +2
Query: 572 PXXPXFPPXXGXXGGGXPXKXPXXFGXFSPXXPPGGLXGXXXXXPGPPXXXXG 730
P P PP G G P G P PPGG+ G P PP G
Sbjct: 1083 PLPPPLPPTLGDYGVAPPPPS-IGAGAPPPPPPPGGITG---VPPPPPIGGLG 1131
>01_01_0446 +
3321832-3322232,3322398-3322455,3322810-3323748,
3324504-3324654,3324740-3324818,3325826-3325934
Length = 578
Score = 30.7 bits (66), Expect = 1.4
Identities = 18/53 (33%), Positives = 18/53 (33%)
Frame = -3
Query: 729 PXXFXGGPGXXXXXPXXPPGGXXGENXPKXXGXXXGXPPPXXPXXGGKXGXXG 571
P G PG P GG G P G G PPP GG G G
Sbjct: 361 PPYSGGAPGGQGSLPPSYDGGYGGR--PMPGGGGPGAPPPYHGGGGGGGGGGG 411
Score = 29.1 bits (62), Expect = 4.3
Identities = 21/72 (29%), Positives = 24/72 (33%), Gaps = 2/72 (2%)
Frame = +3
Query: 543 PPKKLGXWXSXXNQXFPPXXXKXGXVGPXKXPGFLGXFPPXXPX--GXXGGXXXXPPAPX 716
PP G + + P G GP P G PP P G GG PP+
Sbjct: 321 PPSSYGGNNAYNSDSAVPPPSSYGG-GPGSYPPSYGAPPPNPPYSGGAPGGQGSLPPSYD 379
Query: 717 KXXRGXXXPGXG 752
G PG G
Sbjct: 380 GGYGGRPMPGGG 391
Score = 28.7 bits (61), Expect = 5.7
Identities = 19/64 (29%), Positives = 21/64 (32%)
Frame = -3
Query: 729 PXXFXGGPGXXXXXPXXPPGGXXGENXPKXXGXXXGXPPPXXPXXGGKXGXXGXPXPPIF 550
P GG PP G P G PPP P GG G G PP +
Sbjct: 321 PPSSYGGNNAYNSDSAVPPPSSYG-GGPGSYPPSYGAPPPNPPYSGGAPGGQG-SLPPSY 378
Query: 549 WGXF 538
G +
Sbjct: 379 DGGY 382
>10_08_0166 + 15363630-15365633,15366959-15367496,15367577-15367878
Length = 947
Score = 29.9 bits (64), Expect = 2.5
Identities = 19/63 (30%), Positives = 20/63 (31%)
Frame = +2
Query: 557 GGXGFPXXPXFPPXXGXXGGGXPXKXPXXFGXFSPXXPPGGLXGXXXXXPGPPXXXXGXX 736
GG G+P P G GGG G F P G G PG G
Sbjct: 817 GGLGWPGSGVQTPVFGAQGGGSGWSGSGVQGGFGVRRPGFGAQGGGSSWPGFGVQGSGLG 876
Query: 737 XPR 745
PR
Sbjct: 877 WPR 879
>09_04_0688 +
19475847-19477034,19477133-19477384,19477778-19477858,
19477907-19478072,19479009-19479445,19479781-19479837
Length = 726
Score = 29.1 bits (62), Expect = 4.3
Identities = 17/51 (33%), Positives = 24/51 (47%)
Frame = +2
Query: 113 EDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWGKTCSGXS 265
E V LA H N++ T+++ G+H +LR T G TC G S
Sbjct: 262 ESVAVPLAKLAHPPLLNLSPLGPTWMHGTNTVGSHGESLRETEGSTCEGYS 312
>11_06_0458 + 23808402-23808469,23808800-23809684,23810011-23811961,
23812210-23812285,23813064-23813072,23813243-23813335,
23813578-23813581,23813780-23814703,23814926-23815909,
23816073-23816118,23816376-23816951,23817253-23817798,
23817820-23818416
Length = 2252
Score = 28.7 bits (61), Expect = 5.7
Identities = 14/27 (51%), Positives = 17/27 (62%)
Frame = -3
Query: 165 TFSAPRWVVAASILVTSSSLRASTSNP 85
TF A RWV+AA V + L AS S+P
Sbjct: 2100 TFHAHRWVLAARSPVLKAKLSASPSSP 2126
>07_03_1136 + 24218601-24218734,24218769-24219906
Length = 423
Score = 28.7 bits (61), Expect = 5.7
Identities = 17/59 (28%), Positives = 19/59 (32%)
Frame = -3
Query: 741 GXXXPXXFXGGPGXXXXXPXXPPGGXXGENXPKXXGXXXGXPPPXXPXXGGKXGXXGXP 565
G P G G P P GG G + G G P GG+ G G P
Sbjct: 114 GGGPPSLPPGAGGGGGARPPAPGGGGGGGAPRRVLGGGGGGGALARPPGGGRGGALGRP 172
Score = 27.9 bits (59), Expect = 10.0
Identities = 20/67 (29%), Positives = 21/67 (31%)
Frame = +2
Query: 557 GGXGFPXXPXFPPXXGXXGGGXPXKXPXXFGXFSPXXPPGGLXGXXXXXPGPPXXXXGXX 736
GG G P PP G GG P G +P GG G PP G
Sbjct: 110 GGGGGGGPPSLPPGAGGGGGARPPAPGGGGGGGAPRRVLGG-GGGGGALARPPGGGRGGA 168
Query: 737 XPRXRXG 757
R G
Sbjct: 169 LGRPPGG 175
>09_04_0594 -
18831011-18831360,18831562-18832111,18832364-18833406,
18833496-18833760,18835194-18835340,18835431-18835511,
18835626-18835804,18835935-18836093,18836269-18836398,
18836935-18837094,18837337-18837419,18837865-18837915,
18838035-18838151,18838273-18838359
Length = 1133
Score = 28.3 bits (60), Expect = 7.6
Identities = 16/57 (28%), Positives = 26/57 (45%)
Frame = +2
Query: 17 VHFASQWHYTRLVVTQISATMSGGLDVLALNEEDVTKMLAATTHLGAENVNFQMETY 187
V F ++W + + T + G L +ED+ K L+A H E + MET+
Sbjct: 240 VPFIAEWFRNKGHYIKSQVTAATGAIALMQLQEDLKKHLSAECHYTEEELEAYMETH 296
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,635,403
Number of Sequences: 37544
Number of extensions: 451640
Number of successful extensions: 851
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 718
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 819
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2185924824
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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