Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP07_FL5_E06
         (838 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.01 |did4|SPAC644.03c, vps2|vacuolar sorting protein Did4...    30   0.35 
SPAC1D4.02c |||human GRASP protein homolog |Schizosaccharomyces ...    28   1.4  
SPAC56E4.02c |alg13||N-acetylglucosaminyldiphosphodolichol N-ace...    27   3.3  
SPBC800.03 |clr3||histone deacetylase |Schizosaccharomyces pombe...    27   4.4  
SPCC18.08 |||lysine-tRNA ligase|Schizosaccharomyces pombe|chr 3|...    26   7.6  
SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyce...    26   7.6  

>SPAC4F8.01 |did4|SPAC644.03c, vps2|vacuolar sorting protein
           Did4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 210

 Score = 30.3 bits (65), Expect = 0.35
 Identities = 11/25 (44%), Positives = 19/25 (76%)
 Frame = +1

Query: 241 VRVHRANTGRSSNELDRQTTELERR 315
           +R H+ + GR+  ELDR+ T+L++R
Sbjct: 18  LRAHQRSLGRAERELDRERTKLDQR 42


>SPAC1D4.02c |||human GRASP protein homolog |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 345

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 15/49 (30%), Positives = 21/49 (42%)
 Frame = +2

Query: 566 NGFRD*XKNIQYVXVRXVGCDGSVXCGAXPGXXARWXLPWQCSXCXPGD 712
           N +RD  + +  V  R  G +G++ CG   G   R   P       PGD
Sbjct: 175 NHYRDSTRQVTIVPNRHWGGNGAIGCGVGHGVLHRLPAPLSGPPPQPGD 223


>SPAC56E4.02c |alg13||N-acetylglucosaminyldiphosphodolichol
           N-acetylglucosaminyltransferase Alg13
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 162

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = -2

Query: 165 YVARSESIMRDSDVAFSHSAALAIAQVRRNGNK 67
           Y    ES + D+ +  SH+ A +I Q  R+G +
Sbjct: 63  YAPEIESYIHDASIVISHAGAGSILQTLRSGKR 95


>SPBC800.03 |clr3||histone deacetylase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 687

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 9/24 (37%), Positives = 11/24 (45%)
 Frame = +2

Query: 641 CGAXPGXXARWXLPWQCSXCXPGD 712
           CG  PG      +PW C+    GD
Sbjct: 276 CGEGPGLGRTVNIPWSCAGMGDGD 299


>SPCC18.08 |||lysine-tRNA ligase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 531

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 15/39 (38%), Positives = 18/39 (46%)
 Frame = +2

Query: 89  CAIASAAECENATSLSLMIDSLLATYNRDSPPDSKIVVN 205
           C I     C  A  L  + DSL+  YN  SP   K V+N
Sbjct: 378 CEIMLPKTCTVAHLLDKLFDSLVLKYNTSSP---KFVIN 413


>SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 681

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 15/56 (26%), Positives = 27/56 (48%)
 Frame = -2

Query: 183 GGESRLYVARSESIMRDSDVAFSHSAALAIAQVRRNGNKNNISRRHFMTTDLLKLS 16
           GG S L+   +++ + D  +     A+   + +  N +KNNI   H  T++  K S
Sbjct: 31  GGSSELHTYMNDTSLADIPLFEDTLASEVSSSLISNPSKNNIQHLHPNTSEPFKTS 86


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,900,198
Number of Sequences: 5004
Number of extensions: 54107
Number of successful extensions: 151
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 151
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 412451140
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)