Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP07_FL5_E02
         (860 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.01 |did4|SPAC644.03c, vps2|vacuolar sorting protein Did4...    30   0.37 
SPAC19A8.03 |||phosphatidylinositol-3-phosphatase |Schizosacchar...    27   3.4  
SPCC1281.05 |rsc7||RSC complex subunit Rsc7|Schizosaccharomyces ...    26   7.9  

>SPAC4F8.01 |did4|SPAC644.03c, vps2|vacuolar sorting protein
           Did4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 210

 Score = 30.3 bits (65), Expect = 0.37
 Identities = 11/25 (44%), Positives = 19/25 (76%)
 Frame = +1

Query: 241 VRVHRANTGRSSNELDRQTTELERR 315
           +R H+ + GR+  ELDR+ T+L++R
Sbjct: 18  LRAHQRSLGRAERELDRERTKLDQR 42


>SPAC19A8.03 |||phosphatidylinositol-3-phosphatase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 559

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 26/95 (27%), Positives = 40/95 (42%), Gaps = 2/95 (2%)
 Frame = +2

Query: 41  IKCRRLILFCYRFSSL-DAIASAAECENATSLSLMIDSLLATYDRDSPPDSKIVVNLTLH 217
           I+CR  + FC+RF S  DA+      +   S++  I+ L A Y   S  + K+  +    
Sbjct: 66  IQCRDFMFFCWRFQSTEDAMDVYDTLQELMSIN-SINMLYAFYYMPSGDEEKLPSSWKSF 124

Query: 218 LRHANIRESESTVRIQAD-LQMNWIDKRLSWNAGE 319
           L     R        QAD    NW   +++ N  E
Sbjct: 125 LLENEYRRMGVGDSTQADGAGGNWRITKINENYSE 159


>SPCC1281.05 |rsc7||RSC complex subunit Rsc7|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 390

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = -1

Query: 431 YTGRGERSPRRWLQPRLAVPRQASTSVPR 345
           Y+GR  R  R   +PR++ P  +ST VP+
Sbjct: 44  YSGRTRRRNRN-TRPRVSAPSSSSTVVPK 71


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,796,511
Number of Sequences: 5004
Number of extensions: 52647
Number of successful extensions: 161
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 161
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 428468660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)