Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP07_FL5_E02
(860 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_03_0366 - 13102147-13102281,13102560-13102739,13102791-131029... 34 0.17
01_01_0386 - 2985563-2985986,2986301-2986390,2986529-2986668,298... 30 2.7
12_01_0524 - 4167867-4168445 29 3.6
10_08_0267 - 16333239-16333820,16333904-16334842,16334920-163351... 29 4.8
10_07_0056 + 12451510-12451554,12453099-12453149,12453754-124538... 29 4.8
11_06_0411 - 23230580-23230795,23231407-23231862,23232142-232321... 29 6.3
09_04_0190 - 15443764-15443838,15445360-15445458,15446396-154468... 28 8.3
03_01_0591 - 4366400-4366558,4366782-4366985,4367078-4367152,436... 28 8.3
02_01_0296 + 1978565-1981197,1981216-1981639,1982280-1982771,198... 28 8.3
>05_03_0366 -
13102147-13102281,13102560-13102739,13102791-13102992,
13104385-13104575
Length = 235
Score = 33.9 bits (74), Expect = 0.17
Identities = 22/56 (39%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Frame = -2
Query: 343 HQPSAAAPLPCVPTQSFVDPIHLKICLYSHGGLGLTNVSMSQM-QGQVDYDFGVGG 179
H P AAA P VP++ P L + S GG GL S S + G + D G+GG
Sbjct: 7 HSPRAAAAAPSVPSR-LPRPFLLSLSSPSRGGSGLVAASASAVAAGGSEGDGGIGG 61
>01_01_0386 -
2985563-2985986,2986301-2986390,2986529-2986668,
2986798-2986893,2987003-2987042,2987760-2987887
Length = 305
Score = 29.9 bits (64), Expect = 2.7
Identities = 18/52 (34%), Positives = 26/52 (50%)
Frame = -1
Query: 455 PGDGAVIRYTGRGERSPRRWLQPRLAVPRQASTSVPRTPAKCCSPTPLRSNS 300
P D R + R RSPRR P R + + R+PA S +P+R++S
Sbjct: 213 PRDTQSPRGSPRDSRSPRRSASPPNGRNRSPTPNASRSPAPRDSRSPMRADS 264
>12_01_0524 - 4167867-4168445
Length = 192
Score = 29.5 bits (63), Expect = 3.6
Identities = 22/72 (30%), Positives = 32/72 (44%)
Frame = -2
Query: 340 QPSAAAPLPCVPTQSFVDPIHLKICLYSHGGLGLTNVSMSQMQGQVDYDFGVGGGVPIVR 161
QPS+AA P + + + + YSH G + S + G + G GGG P V
Sbjct: 104 QPSSAAVAPLPSSTNLKSAVRSAMGSYSHSGTRRVHFGDSTVLG--EKAAGAGGGEPAV- 160
Query: 160 CEERVDHEGQ*C 125
EE + E + C
Sbjct: 161 VEEVEEEEEKEC 172
>10_08_0267 -
16333239-16333820,16333904-16334842,16334920-16335172,
16336837-16337063,16338189-16339388
Length = 1066
Score = 29.1 bits (62), Expect = 4.8
Identities = 16/46 (34%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
Frame = -1
Query: 449 DGAVIRYTGRGERSPRRWLQPRLAVPRQASTSVPRTP-AKCCSPTP 315
D V+R+ R R RRWL PR ST R + C+ +P
Sbjct: 272 DADVLRWQDRMRRRGRRWLWAFAGAPRPGSTKTVRAQIIEQCTASP 317
>10_07_0056 +
12451510-12451554,12453099-12453149,12453754-12453804,
12453879-12453944,12454011-12454072,12454459-12454537,
12454618-12454722,12454824-12454934,12455017-12455154,
12455298-12455399,12455400-12455474,12455574-12455694,
12455768-12455922,12456004-12456078,12456160-12456363,
12457105-12457221
Length = 518
Score = 29.1 bits (62), Expect = 4.8
Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Frame = +3
Query: 15 GIASIDRLS*NVDDLYYSVTVSP--HLML*LVRQNAKTQHHCP 137
GIAS D N DD++ + SP H+M+ L+ +N K CP
Sbjct: 130 GIASRDGYPANADDIFLTDGASPGVHMMMQLLIRNEKDGILCP 172
>11_06_0411 -
23230580-23230795,23231407-23231862,23232142-23232195,
23232251-23232367
Length = 280
Score = 28.7 bits (61), Expect = 6.3
Identities = 16/39 (41%), Positives = 21/39 (53%)
Frame = +1
Query: 241 VRVHRANTGRSSNELDRQTTELERRGVGLQHLAGVLGTL 357
V+ H R S EL+RQ ELER+G L+ G L +
Sbjct: 89 VQRHGEELERQSRELERQREELERQGRELKMKDGKLNRM 127
>09_04_0190 -
15443764-15443838,15445360-15445458,15446396-15446891,
15449436-15449479,15449999-15450104,15450243-15450314,
15450474-15450588,15451182-15451407
Length = 410
Score = 28.3 bits (60), Expect = 8.3
Identities = 11/26 (42%), Positives = 19/26 (73%)
Frame = +1
Query: 247 VHRANTGRSSNELDRQTTELERRGVG 324
V+ A +SS+ L ++TTE++R G+G
Sbjct: 371 VNEAKETKSSSSLPQKTTEMQRSGIG 396
>03_01_0591 -
4366400-4366558,4366782-4366985,4367078-4367152,
4367240-4367394,4367476-4367596,4367720-4367794,
4369435-4369572,4369655-4369765,4369844-4369948,
4370327-4370405,4370561-4370622,4370698-4370763,
4370840-4371024,4371095-4371173
Length = 537
Score = 28.3 bits (60), Expect = 8.3
Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Frame = +3
Query: 15 GIASIDRLS*NVDDLYYSVTVSP--HLML*LVRQNAKTQHHCP 137
GIAS D N DD++ + SP H+M+ L+ +N + CP
Sbjct: 169 GIASRDGFPANADDIFLTNGASPGVHMMMQLLIRNNRDGIMCP 211
>02_01_0296 +
1978565-1981197,1981216-1981639,1982280-1982771,
1982950-1983087
Length = 1228
Score = 28.3 bits (60), Expect = 8.3
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = -1
Query: 425 GRGERSPRRWLQPRLAVPRQASTSVPRTP 339
GRG RS R L+P LA+ A + +P P
Sbjct: 442 GRGPRSTLRILRPGLAISEMARSMLPAEP 470
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,179,223
Number of Sequences: 37544
Number of extensions: 466289
Number of successful extensions: 1462
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1408
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1462
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2409218220
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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