Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP07_FL5_D18
         (792 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    30   0.22 
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S...    25   0.41 
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1...    29   0.58 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    24   1.9  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    27   2.3  
SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces...    24   4.0  
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    25   9.4  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 30.3 bits (65), Expect = 0.33
 Identities = 11/23 (47%), Positives = 11/23 (47%)
 Frame = +1

Query: 724 PPPPPPPXXXXXXXXXXXXPPPP 792
           PPPPPPP            PPPP
Sbjct: 761 PPPPPPPPGVAGAGPPPPPPPPP 783



 Score = 27.1 bits (57), Expect = 3.1
 Identities = 10/23 (43%), Positives = 10/23 (43%)
 Frame = +3

Query: 723 PPPPPPPXXXXXXXXXXXXAPPP 791
           PPPPPPP             PPP
Sbjct: 761 PPPPPPPPGVAGAGPPPPPPPPP 783



 Score = 26.6 bits (56), Expect = 4.1
 Identities = 10/20 (50%), Positives = 10/20 (50%)
 Frame = -2

Query: 608 GGXXXPPPPPXKKXKKXPPP 549
           GG   PPPPP       PPP
Sbjct: 759 GGPPPPPPPPGVAGAGPPPP 778



 Score = 25.8 bits (54), Expect(2) = 0.22
 Identities = 10/23 (43%), Positives = 10/23 (43%)
 Frame = +3

Query: 723 PPPPPPPXXXXXXXXXXXXAPPP 791
           PPPPPPP            AP P
Sbjct: 775 PPPPPPPPPAVSAGGSRYYAPAP 797



 Score = 23.4 bits (48), Expect(2) = 0.22
 Identities = 8/13 (61%), Positives = 8/13 (61%)
 Frame = +3

Query: 582 GGGGXXXPPPPPP 620
           G  G   PPPPPP
Sbjct: 769 GVAGAGPPPPPPP 781



 Score = 21.8 bits (44), Expect(2) = 8.1
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = +2

Query: 587 GGXXXPPPPP 616
           GG   PPPPP
Sbjct: 759 GGPPPPPPPP 768



 Score = 21.8 bits (44), Expect(2) = 8.1
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +2

Query: 719 APPPPPPP 742
           A PPPPPP
Sbjct: 773 AGPPPPPP 780


>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
           Cap1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 551

 Score = 24.6 bits (51), Expect(2) = 0.41
 Identities = 8/11 (72%), Positives = 8/11 (72%)
 Frame = +2

Query: 587 GGXXXPPPPPP 619
           GG   PPPPPP
Sbjct: 303 GGLPPPPPPPP 313



 Score = 23.8 bits (49), Expect(2) = 0.41
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = +2

Query: 722 PPPPPPP 742
           PPPPPPP
Sbjct: 308 PPPPPPP 314


>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1841

 Score = 29.5 bits (63), Expect = 0.58
 Identities = 14/47 (29%), Positives = 14/47 (29%)
 Frame = +3

Query: 603  PPPPPPXXXKKKKXXXXXXXXXXXXXXXXXXXXXXXXXXXPPPPPPP 743
            PPPPPP   K                              PPPPPPP
Sbjct: 907  PPPPPPLPVKTSLNTFSHPDSVNIVANDTSVAGVMPAFPPPPPPPPP 953



 Score = 25.4 bits (53), Expect = 9.4
 Identities = 13/47 (27%), Positives = 13/47 (27%)
 Frame = +2

Query: 602  PPPPPPXXXKKKKXXXXXXXXXXXXXXXXXXXXXXXXXXAPPPPPPP 742
            P PPPP     K                            PPPPPPP
Sbjct: 905  PTPPPPPPLPVKTSLNTFSHPDSVNIVANDTSVAGVMPAFPPPPPPP 951


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 23.8 bits (49), Expect(2) = 1.9
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = +3

Query: 723 PPPPPPP 743
           PPPPPPP
Sbjct: 337 PPPPPPP 343



 Score = 22.6 bits (46), Expect(2) = 5.3
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = +2

Query: 719 APPPPPP 739
           APPPPPP
Sbjct: 360 APPPPPP 366



 Score = 22.2 bits (45), Expect(2) = 1.9
 Identities = 7/13 (53%), Positives = 7/13 (53%)
 Frame = +3

Query: 582 GGGGXXXPPPPPP 620
           G      PPPPPP
Sbjct: 330 GSSNSSLPPPPPP 342



 Score = 21.8 bits (44), Expect(2) = 5.3
 Identities = 7/13 (53%), Positives = 8/13 (61%)
 Frame = +2

Query: 602 PPPPPPXXXKKKK 640
           PPPPPP    + K
Sbjct: 312 PPPPPPSRRNRGK 324


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 10/22 (45%), Positives = 10/22 (45%)
 Frame = +1

Query: 724 PPPPPPPXXXXXXXXXXXXPPP 789
           PPPPPPP            PPP
Sbjct: 9   PPPPPPPPGFEPPSQPPPPPPP 30



 Score = 27.5 bits (58), Expect = 2.3
 Identities = 10/22 (45%), Positives = 10/22 (45%)
 Frame = +1

Query: 727 PPPPPPXXXXXXXXXXXXPPPP 792
           PPPPPP            PPPP
Sbjct: 9   PPPPPPPPGFEPPSQPPPPPPP 30



 Score = 26.6 bits (56), Expect = 4.1
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = +2

Query: 602 PPPPPPXXXKKKK 640
           PPPPPP   KK+K
Sbjct: 25  PPPPPPGYVKKRK 37



 Score = 25.4 bits (53), Expect = 9.4
 Identities = 9/20 (45%), Positives = 10/20 (50%)
 Frame = -2

Query: 608 GGXXXPPPPPXKKXKKXPPP 549
           G    PPPPP  +    PPP
Sbjct: 7   GNPPPPPPPPGFEPPSQPPP 26


>SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 713

 Score = 23.8 bits (49), Expect(2) = 4.0
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = +2

Query: 722 PPPPPPP 742
           PPPPPPP
Sbjct: 371 PPPPPPP 377



 Score = 21.0 bits (42), Expect(2) = 4.0
 Identities = 6/6 (100%), Positives = 6/6 (100%)
 Frame = +2

Query: 602 PPPPPP 619
           PPPPPP
Sbjct: 370 PPPPPP 375


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = +2

Query: 719 APPPPPPP 742
           APPPPPPP
Sbjct: 237 APPPPPPP 244


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,729,282
Number of Sequences: 5004
Number of extensions: 23996
Number of successful extensions: 412
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 158
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 385381248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)