Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP07_FL5_D15
         (852 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC162.12 ||SPCC1753.06c|sequence orphan|Schizosaccharomyces po...    29   0.84 
SPBC947.02 |apl2||AP-1 adaptor complex subunit Apl2 |Schizosacch...    27   2.6  
SPBC12C2.07c |||spermidine synthase |Schizosaccharomyces pombe|c...    27   4.5  
SPAP27G11.15 |slx1||structure-specific endonuclease catalytic su...    26   5.9  

>SPCC162.12 ||SPCC1753.06c|sequence orphan|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 451

 Score = 29.1 bits (62), Expect = 0.84
 Identities = 16/37 (43%), Positives = 20/37 (54%)
 Frame = +3

Query: 630 NVPLFTAPVSTRILSAPPTLTAGAELSLPAKWMVPAT 740
           N P +     + I S PPTL+ G  LSL A   VP+T
Sbjct: 239 NQPKWQIHSGSDIASEPPTLSRGNSLSLLANRKVPST 275


>SPBC947.02 |apl2||AP-1 adaptor complex subunit Apl2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 683

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 18/52 (34%), Positives = 25/52 (48%)
 Frame = +3

Query: 612 LLDLDFNVPLFTAPVSTRILSAPPTLTAGAELSLPAKWMVPAT*NVYWSKMR 767
           LLDLDF  P  T+   + I SA P   + + + L   +  P+T N    K R
Sbjct: 623 LLDLDFTDPGATSASDSPITSAQPQSGSNSAMDLFMAFEAPSTNNAEPVKAR 674


>SPBC12C2.07c |||spermidine synthase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 298

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
 Frame = -3

Query: 199 GVLTGSFTCRWISCWLMPNSFSAMQM*TP-VSFRYSDTISSVPSDS 65
           GV+T    C WI   ++ N  +A++   P V + Y+ TI + PS S
Sbjct: 196 GVITTQAECMWIHLGVISNVLTAVKTVFPNVRYAYT-TIPTYPSGS 240


>SPAP27G11.15 |slx1||structure-specific endonuclease catalytic
           subunit |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 271

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = +3

Query: 246 GRPLVLRCLVYGYP 287
           GRP  + CLVYG+P
Sbjct: 52  GRPWSISCLVYGFP 65


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,190,841
Number of Sequences: 5004
Number of extensions: 62892
Number of successful extensions: 219
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 208
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 219
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 422462090
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)