Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP07_FL5_D08
(806 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 29 5.2
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 29 5.2
U58748-9|AAB52969.3| 542|Caenorhabditis elegans Hypothetical pr... 25 5.9
U58748-8|AAM97986.1| 497|Caenorhabditis elegans Hypothetical pr... 25 5.9
U58748-7|AAM97987.1| 399|Caenorhabditis elegans Hypothetical pr... 25 6.1
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 28 6.8
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 28 6.8
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 28 6.8
Z81053-1|CAB02877.1| 385|Caenorhabditis elegans Hypothetical pr... 23 7.9
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 28.7 bits (61), Expect = 5.2
Identities = 15/40 (37%), Positives = 15/40 (37%)
Frame = +2
Query: 674 PPPPPPPXXXXXXXXXXXXXXXXXXPPPXPXXXFXXPGGG 793
PPPPPPP PPP P F PG G
Sbjct: 297 PPPPPPP-----PGRTPGPPGMPGMPPPPPPSRFGPPGMG 331
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 28.7 bits (61), Expect = 5.2
Identities = 15/40 (37%), Positives = 15/40 (37%)
Frame = +2
Query: 674 PPPPPPPXXXXXXXXXXXXXXXXXXPPPXPXXXFXXPGGG 793
PPPPPPP PPP P F PG G
Sbjct: 307 PPPPPPP-----PGRTPGPPGMPGMPPPPPPSRFGPPGMG 341
>U58748-9|AAB52969.3| 542|Caenorhabditis elegans Hypothetical
protein ZK180.5a protein.
Length = 542
Score = 25.4 bits (53), Expect(2) = 5.9
Identities = 9/15 (60%), Positives = 9/15 (60%)
Frame = +3
Query: 750 PPPPPXXXFXXXGGG 794
PPPPP F GGG
Sbjct: 66 PPPPPPPAFGGLGGG 80
Score = 21.4 bits (43), Expect(2) = 5.9
Identities = 7/12 (58%), Positives = 7/12 (58%)
Frame = +3
Query: 657 PXXGXXXPPPPP 692
P G PPPPP
Sbjct: 58 PPIGYGAPPPPP 69
>U58748-8|AAM97986.1| 497|Caenorhabditis elegans Hypothetical
protein ZK180.5b protein.
Length = 497
Score = 25.4 bits (53), Expect(2) = 5.9
Identities = 9/15 (60%), Positives = 9/15 (60%)
Frame = +3
Query: 750 PPPPPXXXFXXXGGG 794
PPPPP F GGG
Sbjct: 66 PPPPPPPAFGGLGGG 80
Score = 21.4 bits (43), Expect(2) = 5.9
Identities = 7/12 (58%), Positives = 7/12 (58%)
Frame = +3
Query: 657 PXXGXXXPPPPP 692
P G PPPPP
Sbjct: 58 PPIGYGAPPPPP 69
>U58748-7|AAM97987.1| 399|Caenorhabditis elegans Hypothetical
protein ZK180.5c protein.
Length = 399
Score = 25.4 bits (53), Expect(2) = 6.1
Identities = 9/15 (60%), Positives = 9/15 (60%)
Frame = +3
Query: 750 PPPPPXXXFXXXGGG 794
PPPPP F GGG
Sbjct: 66 PPPPPPPAFGGLGGG 80
Score = 21.4 bits (43), Expect(2) = 6.1
Identities = 7/12 (58%), Positives = 7/12 (58%)
Frame = +3
Query: 657 PXXGXXXPPPPP 692
P G PPPPP
Sbjct: 58 PPIGYGAPPPPP 69
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 28.3 bits (60), Expect = 6.8
Identities = 12/37 (32%), Positives = 12/37 (32%)
Frame = +2
Query: 674 PPPPPPPXXXXXXXXXXXXXXXXXXPPPXPXXXFXXP 784
PPPPPPP PPP P P
Sbjct: 759 PPPPPPPGGCPPPPPPPPPGGFKGGPPPPPPPGMFAP 795
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 28.3 bits (60), Expect = 6.8
Identities = 12/37 (32%), Positives = 12/37 (32%)
Frame = +2
Query: 674 PPPPPPPXXXXXXXXXXXXXXXXXXPPPXPXXXFXXP 784
PPPPPPP PPP P P
Sbjct: 759 PPPPPPPGGCPPPPPPPPPGGFKGGPPPPPPPGMFAP 795
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 28.3 bits (60), Expect = 6.8
Identities = 12/37 (32%), Positives = 12/37 (32%)
Frame = +2
Query: 674 PPPPPPPXXXXXXXXXXXXXXXXXXPPPXPXXXFXXP 784
PPPPPPP PPP P P
Sbjct: 342 PPPPPPPGGCPPPPPPPPPGGFKGGPPPPPPPGMFAP 378
>Z81053-1|CAB02877.1| 385|Caenorhabditis elegans Hypothetical
protein E02A10.2 protein.
Length = 385
Score = 23.4 bits (48), Expect(2) = 7.9
Identities = 15/40 (37%), Positives = 15/40 (37%)
Frame = -3
Query: 792 PPPGXKXXKXGXGGGXXXXXXXXXXXXXGXXXXGGGGGGG 673
PPP G GGG G GGGGGGG
Sbjct: 111 PPPPPPACGGGCGGGGGGCGGGCGGGGGGGC--GGGGGGG 148
Score = 23.0 bits (47), Expect(2) = 7.9
Identities = 9/16 (56%), Positives = 10/16 (62%)
Frame = -3
Query: 693 GGGGGGGXXRXXXKKK 646
GGGGGGG +KK
Sbjct: 179 GGGGGGGCGGGCGRKK 194
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,538,049
Number of Sequences: 27780
Number of extensions: 259948
Number of successful extensions: 2133
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 670
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1646
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1977346024
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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