Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP07_FL5_D07
         (865 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC887.02 |||ClC chloride channel|Schizosaccharomyces pombe|chr...    27   2.6  
SPAC186.03 |||L-asparaginase|Schizosaccharomyces pombe|chr 1|||M...    27   3.4  
SPBPB21E7.09 ||SPAPB21E7.09, SPAPB21E7.09|L-asparaginase |Schizo...    26   7.9  
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce...    26   7.9  
SPBC409.18 |||phosphatidic acid phosphatase |Schizosaccharomyces...    26   7.9  

>SPBC887.02 |||ClC chloride channel|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 667

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 19/67 (28%), Positives = 29/67 (43%)
 Frame = -2

Query: 276 LPTLSVYLSSPRSTWPHTNILTSL*THCTSVTASVNCQNLHDHNTIMKRDGHDQFTPVLM 97
           L  L+  L+S R  +   NIL    T C+++T    CQ          R+ H  F   L+
Sbjct: 54  LNALASLLNSFREGYCTVNILFDKQTCCSTLTEDYECQEF-----FFWRNNHSVFVSCLI 108

Query: 96  NIMVKIG 76
            + V +G
Sbjct: 109 YVSVSVG 115


>SPAC186.03 |||L-asparaginase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 360

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 10/35 (28%), Positives = 20/35 (57%)
 Frame = +1

Query: 25  HRHRALGRFRTYYFTGLANFNHNIHQNRRKLIVTI 129
           + HR +  F  YY+ G+ ++  N  + R  L+++I
Sbjct: 309 YSHRTMDGFSDYYYNGIPSYFQNPQKARYMLMLSI 343


>SPBPB21E7.09 ||SPAPB21E7.09, SPAPB21E7.09|L-asparaginase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 360

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 10/35 (28%), Positives = 19/35 (54%)
 Frame = +1

Query: 25  HRHRALGRFRTYYFTGLANFNHNIHQNRRKLIVTI 129
           + HR +  F  YY+ G+  +  N  + R  L+++I
Sbjct: 309 YSHRTMDGFSDYYYNGIPAYFQNPQKARYMLMLSI 343


>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1957

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 13/23 (56%), Positives = 15/23 (65%)
 Frame = +3

Query: 216 GCLCVAMSSVAKKDKPTMSVTAL 284
           G L + +SS  KKDK T SVT L
Sbjct: 154 GILSLQLSSSNKKDKNTSSVTTL 176


>SPBC409.18 |||phosphatidic acid phosphatase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 279

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = -2

Query: 741 AVLATIPLAFIYYTILVLPARVCEILPDCPLEEPFA 634
           AVL  I L++  + +L+LP      L D  +  PFA
Sbjct: 19  AVLIAISLSYFVFDVLMLPFTRQFSLEDITISHPFA 54


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,012,571
Number of Sequences: 5004
Number of extensions: 53750
Number of successful extensions: 129
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 430470850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)